PMC:7519301 / 35757-36322
Annnotations
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T3 | 382-385 | Body_part | denotes | tip | http://purl.obolibrary.org/obo/UBERON_2001840 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T279 | 184-185 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T280 | 439-442 | http://purl.obolibrary.org/obo/NCBITaxon_314295 | denotes | ape |
| T281 | 457-459 | http://purl.obolibrary.org/obo/CLO_0001407 | denotes | 52 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T97 | 296-301 | Chemical | denotes | gamma | http://purl.obolibrary.org/obo/CHEBI_30212 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T217 | 0-321 | Sentence | denotes | To identify individual sequences that were much more divergent than expected, given their sampling date, which likely reflected sequencing artifacts rather than evolution, we obtained a tree using FastTree v2.10.1 compiled with double precision under the general time reversible (GTR) model with gamma heterogeneity (51). |
| T218 | 322-465 | Sentence | denotes | This tree was rooted at the reference sequence, and root-to-tip regression was performed following TempEst using the ape package in R (52, 53). |
| T219 | 466-565 | Sentence | denotes | Outliers were defined as sequences that had studentized residuals greater than 3, and were removed. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32868447-20224823-132542413 | 317-319 | 20224823 | denotes | 51 |
| 32868447-27774300-132542414 | 457-459 | 27774300 | denotes | 52 |
| 32868447-30016406-132542415 | 461-463 | 30016406 | denotes | 53 |