PMC:7519301 / 2503-3844 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7519301","sourcedb":"PMC","sourceid":"7519301","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7519301","text":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes COVID-19, is a member of the Coronaviridae family, a diverse group of virus species, seven of which are known to infect humans. Four are considered endemic and typically cause mild upper respiratory illnesses; two of these, NL63 and 229E, are within the alphacoronavirus genus, and two, HKU1 and OC43, are betacoronaviruses. The latter genus comprises the three highly pathogenic human coronaviruses, including SARS-CoV-2, as well as Middle Eastern respiratory syndrome (MERS) CoV and severe acute respiratory syndrome (SARS) CoV. SARS-CoV is the most closely related human virus to SARS-CoV-2, which is a single-stranded positive-sense RNA virus, with an ∼30,000-base pair genome. The genome is split into 10 open reading frames (ORFs) that include 16 nonstructural proteins and four structural proteins. The latter category includes Spike (S), Membrane (M), Envelope (E), and Nucleocapsid (N). S is the basis for most candidate vaccines, as it mediates virus attachment and entry to host cells and is the target of neutralizing antibody responses (1–4). S is cleaved into two subunits, S1 and S2: The former contains the receptor binding domain (RBD), which enables the virus to attach to the angiotensin-converting enzyme 2 (ACE2) receptor on host cells.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T8","span":{"begin":721,"end":724},"obj":"Body_part"},{"id":"T9","span":{"begin":758,"end":764},"obj":"Body_part"},{"id":"T10","span":{"begin":770,"end":776},"obj":"Body_part"},{"id":"T11","span":{"begin":851,"end":859},"obj":"Body_part"},{"id":"T12","span":{"begin":880,"end":888},"obj":"Body_part"},{"id":"T13","span":{"begin":1074,"end":1079},"obj":"Body_part"},{"id":"T14","span":{"begin":1114,"end":1122},"obj":"Body_part"},{"id":"T15","span":{"begin":1335,"end":1340},"obj":"Body_part"}],"attributes":[{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma62871"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T23","span":{"begin":0,"end":47},"obj":"Disease"},{"id":"T24","span":{"begin":49,"end":57},"obj":"Disease"},{"id":"T25","span":{"begin":49,"end":53},"obj":"Disease"},{"id":"T26","span":{"begin":84,"end":92},"obj":"Disease"},{"id":"T27","span":{"begin":495,"end":503},"obj":"Disease"},{"id":"T28","span":{"begin":495,"end":499},"obj":"Disease"},{"id":"T29","span":{"begin":569,"end":602},"obj":"Disease"},{"id":"T30","span":{"begin":604,"end":608},"obj":"Disease"},{"id":"T31","span":{"begin":615,"end":623},"obj":"Disease"},{"id":"T32","span":{"begin":615,"end":619},"obj":"Disease"},{"id":"T33","span":{"begin":667,"end":675},"obj":"Disease"},{"id":"T34","span":{"begin":667,"end":671},"obj":"Disease"}],"attributes":[{"id":"A23","pred":"mondo_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A24","pred":"mondo_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A25","pred":"mondo_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A26","pred":"mondo_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A27","pred":"mondo_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A28","pred":"mondo_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A29","pred":"mondo_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A30","pred":"mondo_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A31","pred":"mondo_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T33","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T15","span":{"begin":66,"end":71},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T16","span":{"begin":97,"end":98},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T17","span":{"begin":135,"end":136},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T18","span":{"begin":154,"end":159},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T19","span":{"begin":204,"end":210},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T20","span":{"begin":464,"end":469},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T21","span":{"begin":652,"end":657},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T22","span":{"begin":658,"end":663},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T23","span":{"begin":688,"end":689},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T24","span":{"begin":725,"end":730},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T25","span":{"begin":930,"end":938},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T26","span":{"begin":1039,"end":1044},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T27","span":{"begin":1074,"end":1079},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T28","span":{"begin":1172,"end":1174},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T29","span":{"begin":1179,"end":1181},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T30","span":{"begin":1179,"end":1181},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"},{"id":"T31","span":{"begin":1256,"end":1261},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T32","span":{"begin":1335,"end":1340},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T15","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T18","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T19","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T20","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T21","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T22","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T26","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T27","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T28","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T29","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T30","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T31","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T32","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T5","span":{"begin":145,"end":150},"obj":"Chemical"},{"id":"T6","span":{"begin":748,"end":752},"obj":"Chemical"},{"id":"T7","span":{"begin":851,"end":859},"obj":"Chemical"},{"id":"T8","span":{"begin":880,"end":888},"obj":"Chemical"},{"id":"T9","span":{"begin":1179,"end":1181},"obj":"Chemical"},{"id":"T10","span":{"begin":1279,"end":1290},"obj":"Chemical"}],"attributes":[{"id":"A5","pred":"chebi_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CHEBI_24433"},{"id":"A6","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_22695"},{"id":"A7","pred":"chebi_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A8","pred":"chebi_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A9","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"},{"id":"A10","pred":"chebi_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/CHEBI_48433"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"66","span":{"begin":919,"end":924},"obj":"Gene"},{"id":"67","span":{"begin":926,"end":927},"obj":"Gene"},{"id":"68","span":{"begin":930,"end":938},"obj":"Gene"},{"id":"69","span":{"begin":940,"end":941},"obj":"Gene"},{"id":"70","span":{"begin":944,"end":952},"obj":"Gene"},{"id":"71","span":{"begin":962,"end":974},"obj":"Gene"},{"id":"72","span":{"begin":976,"end":977},"obj":"Gene"},{"id":"73","span":{"begin":1279,"end":1310},"obj":"Gene"},{"id":"74","span":{"begin":1312,"end":1316},"obj":"Gene"},{"id":"75","span":{"begin":1140,"end":1141},"obj":"Gene"},{"id":"76","span":{"begin":980,"end":981},"obj":"Gene"},{"id":"77","span":{"begin":0,"end":47},"obj":"Species"},{"id":"78","span":{"begin":49,"end":59},"obj":"Species"},{"id":"79","span":{"begin":113,"end":126},"obj":"Species"},{"id":"80","span":{"begin":204,"end":210},"obj":"Species"},{"id":"81","span":{"begin":390,"end":407},"obj":"Species"},{"id":"82","span":{"begin":464,"end":469},"obj":"Species"},{"id":"83","span":{"begin":470,"end":483},"obj":"Species"},{"id":"84","span":{"begin":495,"end":505},"obj":"Species"},{"id":"85","span":{"begin":555,"end":564},"obj":"Species"},{"id":"86","span":{"begin":569,"end":613},"obj":"Species"},{"id":"87","span":{"begin":615,"end":623},"obj":"Species"},{"id":"88","span":{"begin":652,"end":657},"obj":"Species"},{"id":"89","span":{"begin":667,"end":677},"obj":"Species"},{"id":"90","span":{"begin":84,"end":92},"obj":"Disease"},{"id":"91","span":{"begin":265,"end":292},"obj":"Disease"}],"attributes":[{"id":"A66","pred":"tao:has_database_id","subj":"66","obj":"Gene:43740568"},{"id":"A67","pred":"tao:has_database_id","subj":"67","obj":"Gene:43740568"},{"id":"A68","pred":"tao:has_database_id","subj":"68","obj":"Gene:43740571"},{"id":"A69","pred":"tao:has_database_id","subj":"69","obj":"Gene:43740571"},{"id":"A70","pred":"tao:has_database_id","subj":"70","obj":"Gene:43740570"},{"id":"A71","pred":"tao:has_database_id","subj":"71","obj":"Gene:43740575"},{"id":"A72","pred":"tao:has_database_id","subj":"72","obj":"Gene:43740575"},{"id":"A73","pred":"tao:has_database_id","subj":"73","obj":"Gene:59272"},{"id":"A74","pred":"tao:has_database_id","subj":"74","obj":"Gene:59272"},{"id":"A75","pred":"tao:has_database_id","subj":"75","obj":"Gene:43740568"},{"id":"A76","pred":"tao:has_database_id","subj":"76","obj":"Gene:43740568"},{"id":"A77","pred":"tao:has_database_id","subj":"77","obj":"Tax:2697049"},{"id":"A78","pred":"tao:has_database_id","subj":"78","obj":"Tax:2697049"},{"id":"A79","pred":"tao:has_database_id","subj":"79","obj":"Tax:11118"},{"id":"A80","pred":"tao:has_database_id","subj":"80","obj":"Tax:9606"},{"id":"A81","pred":"tao:has_database_id","subj":"81","obj":"Tax:694002"},{"id":"A82","pred":"tao:has_database_id","subj":"82","obj":"Tax:9606"},{"id":"A83","pred":"tao:has_database_id","subj":"83","obj":"Tax:11118"},{"id":"A84","pred":"tao:has_database_id","subj":"84","obj":"Tax:2697049"},{"id":"A85","pred":"tao:has_database_id","subj":"85","obj":"Tax:1335626"},{"id":"A86","pred":"tao:has_database_id","subj":"86","obj":"Tax:694009"},{"id":"A87","pred":"tao:has_database_id","subj":"87","obj":"Tax:694009"},{"id":"A88","pred":"tao:has_database_id","subj":"88","obj":"Tax:9606"},{"id":"A89","pred":"tao:has_database_id","subj":"89","obj":"Tax:2697049"},{"id":"A90","pred":"tao:has_database_id","subj":"90","obj":"MESH:C000657245"},{"id":"A91","pred":"tao:has_database_id","subj":"91","obj":"MESH:D012141"},{"subj":"66","pred":"source","obj":"LitCovid-PubTator"},{"subj":"67","pred":"source","obj":"LitCovid-PubTator"},{"subj":"68","pred":"source","obj":"LitCovid-PubTator"},{"subj":"69","pred":"source","obj":"LitCovid-PubTator"},{"subj":"70","pred":"source","obj":"LitCovid-PubTator"},{"subj":"71","pred":"source","obj":"LitCovid-PubTator"},{"subj":"72","pred":"source","obj":"LitCovid-PubTator"},{"subj":"73","pred":"source","obj":"LitCovid-PubTator"},{"subj":"74","pred":"source","obj":"LitCovid-PubTator"},{"subj":"75","pred":"source","obj":"LitCovid-PubTator"},{"subj":"76","pred":"source","obj":"LitCovid-PubTator"},{"subj":"77","pred":"source","obj":"LitCovid-PubTator"},{"subj":"78","pred":"source","obj":"LitCovid-PubTator"},{"subj":"79","pred":"source","obj":"LitCovid-PubTator"},{"subj":"80","pred":"source","obj":"LitCovid-PubTator"},{"subj":"81","pred":"source","obj":"LitCovid-PubTator"},{"subj":"82","pred":"source","obj":"LitCovid-PubTator"},{"subj":"83","pred":"source","obj":"LitCovid-PubTator"},{"subj":"84","pred":"source","obj":"LitCovid-PubTator"},{"subj":"85","pred":"source","obj":"LitCovid-PubTator"},{"subj":"86","pred":"source","obj":"LitCovid-PubTator"},{"subj":"87","pred":"source","obj":"LitCovid-PubTator"},{"subj":"88","pred":"source","obj":"LitCovid-PubTator"},{"subj":"89","pred":"source","obj":"LitCovid-PubTator"},{"subj":"90","pred":"source","obj":"LitCovid-PubTator"},{"subj":"91","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":271,"end":292},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0002086"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":1060,"end":1073},"obj":"http://purl.obolibrary.org/obo/GO_0044409"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T21","span":{"begin":0,"end":211},"obj":"Sentence"},{"id":"T22","span":{"begin":212,"end":408},"obj":"Sentence"},{"id":"T23","span":{"begin":409,"end":614},"obj":"Sentence"},{"id":"T24","span":{"begin":615,"end":765},"obj":"Sentence"},{"id":"T25","span":{"begin":766,"end":889},"obj":"Sentence"},{"id":"T26","span":{"begin":890,"end":979},"obj":"Sentence"},{"id":"T27","span":{"begin":980,"end":1139},"obj":"Sentence"},{"id":"T28","span":{"begin":1140,"end":1182},"obj":"Sentence"},{"id":"T29","span":{"begin":1183,"end":1341},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T21","pred":"source","obj":"LitCovid-sentences"},{"subj":"T22","pred":"source","obj":"LitCovid-sentences"},{"subj":"T23","pred":"source","obj":"LitCovid-sentences"},{"subj":"T24","pred":"source","obj":"LitCovid-sentences"},{"subj":"T25","pred":"source","obj":"LitCovid-sentences"},{"subj":"T26","pred":"source","obj":"LitCovid-sentences"},{"subj":"T27","pred":"source","obj":"LitCovid-sentences"},{"subj":"T28","pred":"source","obj":"LitCovid-sentences"},{"subj":"T29","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#cd93ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#93ecb3"},{"id":"LitCovid-PD-CLO","color":"#ec9993"},{"id":"LitCovid-PD-CHEBI","color":"#93a6ec"},{"id":"LitCovid-PubTator","color":"#c0ec93"},{"id":"LitCovid-PD-HP","color":"#ec93da"},{"id":"LitCovid-PD-GO-BP","color":"#93ece4"},{"id":"LitCovid-sentences","color":"#ecca93"}]}]}}