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PMC:7519301 / 2503-3844 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T8 721-724 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T9 758-764 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T10 770-776 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T11 851-859 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 880-888 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T13 1074-1079 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T14 1114-1122 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T15 1335-1340 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T23 0-47 Disease denotes Severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T24 49-57 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 49-53 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 84-92 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 495-503 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 495-499 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T29 569-602 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T30 604-608 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 615-623 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 615-619 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 667-675 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 667-671 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T15 66-71 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T16 97-98 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 135-136 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 154-159 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 204-210 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T20 464-469 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T21 652-657 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T22 658-663 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 688-689 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 725-730 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T25 930-938 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T26 1039-1044 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T27 1074-1079 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T28 1172-1174 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T29 1179-1181 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T30 1179-1181 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T31 1256-1261 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T32 1335-1340 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 145-150 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T6 748-752 Chemical denotes base http://purl.obolibrary.org/obo/CHEBI_22695
T7 851-859 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T8 880-888 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T9 1179-1181 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T10 1279-1290 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
66 919-924 Gene denotes Spike Gene:43740568
67 926-927 Gene denotes S Gene:43740568
68 930-938 Gene denotes Membrane Gene:43740571
69 940-941 Gene denotes M Gene:43740571
70 944-952 Gene denotes Envelope Gene:43740570
71 962-974 Gene denotes Nucleocapsid Gene:43740575
72 976-977 Gene denotes N Gene:43740575
73 1279-1310 Gene denotes angiotensin-converting enzyme 2 Gene:59272
74 1312-1316 Gene denotes ACE2 Gene:59272
75 1140-1141 Gene denotes S Gene:43740568
76 980-981 Gene denotes S Gene:43740568
77 0-47 Species denotes Severe acute respiratory syndrome coronavirus 2 Tax:2697049
78 49-59 Species denotes SARS-CoV-2 Tax:2697049
79 113-126 Species denotes Coronaviridae Tax:11118
80 204-210 Species denotes humans Tax:9606
81 390-407 Species denotes betacoronaviruses Tax:694002
82 464-469 Species denotes human Tax:9606
83 470-483 Species denotes coronaviruses Tax:11118
84 495-505 Species denotes SARS-CoV-2 Tax:2697049
85 555-564 Species denotes MERS) CoV Tax:1335626
86 569-613 Species denotes severe acute respiratory syndrome (SARS) CoV Tax:694009
87 615-623 Species denotes SARS-CoV Tax:694009
88 652-657 Species denotes human Tax:9606
89 667-677 Species denotes SARS-CoV-2 Tax:2697049
90 84-92 Disease denotes COVID-19 MESH:C000657245
91 265-292 Disease denotes upper respiratory illnesses MESH:D012141

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 271-292 Phenotype denotes respiratory illnesses http://purl.obolibrary.org/obo/HP_0002086

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1060-1073 http://purl.obolibrary.org/obo/GO_0044409 denotes entry to host

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T21 0-211 Sentence denotes Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes COVID-19, is a member of the Coronaviridae family, a diverse group of virus species, seven of which are known to infect humans.
T22 212-408 Sentence denotes Four are considered endemic and typically cause mild upper respiratory illnesses; two of these, NL63 and 229E, are within the alphacoronavirus genus, and two, HKU1 and OC43, are betacoronaviruses.
T23 409-614 Sentence denotes The latter genus comprises the three highly pathogenic human coronaviruses, including SARS-CoV-2, as well as Middle Eastern respiratory syndrome (MERS) CoV and severe acute respiratory syndrome (SARS) CoV.
T24 615-765 Sentence denotes SARS-CoV is the most closely related human virus to SARS-CoV-2, which is a single-stranded positive-sense RNA virus, with an ∼30,000-base pair genome.
T25 766-889 Sentence denotes The genome is split into 10 open reading frames (ORFs) that include 16 nonstructural proteins and four structural proteins.
T26 890-979 Sentence denotes The latter category includes Spike (S), Membrane (M), Envelope (E), and Nucleocapsid (N).
T27 980-1139 Sentence denotes S is the basis for most candidate vaccines, as it mediates virus attachment and entry to host cells and is the target of neutralizing antibody responses (1–4).
T28 1140-1182 Sentence denotes S is cleaved into two subunits, S1 and S2:
T29 1183-1341 Sentence denotes The former contains the receptor binding domain (RBD), which enables the virus to attach to the angiotensin-converting enzyme 2 (ACE2) receptor on host cells.