
PMC:7519301 / 2503-3844
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T8 | 721-724 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
T9 | 758-764 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
T10 | 770-776 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
T11 | 851-859 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T12 | 880-888 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
T13 | 1074-1079 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T14 | 1114-1122 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
T15 | 1335-1340 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T23 | 0-47 | Disease | denotes | Severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T24 | 49-57 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T25 | 49-53 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T26 | 84-92 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T27 | 495-503 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T28 | 495-499 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T29 | 569-602 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
T30 | 604-608 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T31 | 615-623 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T32 | 615-619 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T33 | 667-675 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T34 | 667-671 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15 | 66-71 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T16 | 97-98 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T17 | 135-136 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T18 | 154-159 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T19 | 204-210 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | humans |
T20 | 464-469 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T21 | 652-657 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T22 | 658-663 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T23 | 688-689 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T24 | 725-730 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T25 | 930-938 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | Membrane |
T26 | 1039-1044 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T27 | 1074-1079 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T28 | 1172-1174 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T29 | 1179-1181 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T30 | 1179-1181 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T31 | 1256-1261 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T32 | 1335-1340 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T5 | 145-150 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
T6 | 748-752 | Chemical | denotes | base | http://purl.obolibrary.org/obo/CHEBI_22695 |
T7 | 851-859 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T8 | 880-888 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T9 | 1179-1181 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T10 | 1279-1290 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
66 | 919-924 | Gene | denotes | Spike | Gene:43740568 |
67 | 926-927 | Gene | denotes | S | Gene:43740568 |
68 | 930-938 | Gene | denotes | Membrane | Gene:43740571 |
69 | 940-941 | Gene | denotes | M | Gene:43740571 |
70 | 944-952 | Gene | denotes | Envelope | Gene:43740570 |
71 | 962-974 | Gene | denotes | Nucleocapsid | Gene:43740575 |
72 | 976-977 | Gene | denotes | N | Gene:43740575 |
73 | 1279-1310 | Gene | denotes | angiotensin-converting enzyme 2 | Gene:59272 |
74 | 1312-1316 | Gene | denotes | ACE2 | Gene:59272 |
75 | 1140-1141 | Gene | denotes | S | Gene:43740568 |
76 | 980-981 | Gene | denotes | S | Gene:43740568 |
77 | 0-47 | Species | denotes | Severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
78 | 49-59 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
79 | 113-126 | Species | denotes | Coronaviridae | Tax:11118 |
80 | 204-210 | Species | denotes | humans | Tax:9606 |
81 | 390-407 | Species | denotes | betacoronaviruses | Tax:694002 |
82 | 464-469 | Species | denotes | human | Tax:9606 |
83 | 470-483 | Species | denotes | coronaviruses | Tax:11118 |
84 | 495-505 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
85 | 555-564 | Species | denotes | MERS) CoV | Tax:1335626 |
86 | 569-613 | Species | denotes | severe acute respiratory syndrome (SARS) CoV | Tax:694009 |
87 | 615-623 | Species | denotes | SARS-CoV | Tax:694009 |
88 | 652-657 | Species | denotes | human | Tax:9606 |
89 | 667-677 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
90 | 84-92 | Disease | denotes | COVID-19 | MESH:C000657245 |
91 | 265-292 | Disease | denotes | upper respiratory illnesses | MESH:D012141 |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 271-292 | Phenotype | denotes | respiratory illnesses | http://purl.obolibrary.org/obo/HP_0002086 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 1060-1073 | http://purl.obolibrary.org/obo/GO_0044409 | denotes | entry to host |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21 | 0-211 | Sentence | denotes | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes COVID-19, is a member of the Coronaviridae family, a diverse group of virus species, seven of which are known to infect humans. |
T22 | 212-408 | Sentence | denotes | Four are considered endemic and typically cause mild upper respiratory illnesses; two of these, NL63 and 229E, are within the alphacoronavirus genus, and two, HKU1 and OC43, are betacoronaviruses. |
T23 | 409-614 | Sentence | denotes | The latter genus comprises the three highly pathogenic human coronaviruses, including SARS-CoV-2, as well as Middle Eastern respiratory syndrome (MERS) CoV and severe acute respiratory syndrome (SARS) CoV. |
T24 | 615-765 | Sentence | denotes | SARS-CoV is the most closely related human virus to SARS-CoV-2, which is a single-stranded positive-sense RNA virus, with an ∼30,000-base pair genome. |
T25 | 766-889 | Sentence | denotes | The genome is split into 10 open reading frames (ORFs) that include 16 nonstructural proteins and four structural proteins. |
T26 | 890-979 | Sentence | denotes | The latter category includes Spike (S), Membrane (M), Envelope (E), and Nucleocapsid (N). |
T27 | 980-1139 | Sentence | denotes | S is the basis for most candidate vaccines, as it mediates virus attachment and entry to host cells and is the target of neutralizing antibody responses (1–4). |
T28 | 1140-1182 | Sentence | denotes | S is cleaved into two subunits, S1 and S2: |
T29 | 1183-1341 | Sentence | denotes | The former contains the receptor binding domain (RBD), which enables the virus to attach to the angiotensin-converting enzyme 2 (ACE2) receptor on host cells. |