PMC:7473770 / 25294-26048 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T169","span":{"begin":217,"end":228},"obj":"Body_part"},{"id":"T170","span":{"begin":274,"end":291},"obj":"Body_part"},{"id":"T171","span":{"begin":274,"end":278},"obj":"Body_part"},{"id":"T172","span":{"begin":353,"end":357},"obj":"Body_part"},{"id":"T173","span":{"begin":420,"end":424},"obj":"Body_part"},{"id":"T174","span":{"begin":478,"end":482},"obj":"Body_part"},{"id":"T175","span":{"begin":521,"end":527},"obj":"Body_part"},{"id":"T176","span":{"begin":539,"end":543},"obj":"Body_part"},{"id":"T177","span":{"begin":621,"end":626},"obj":"Body_part"},{"id":"T178","span":{"begin":717,"end":723},"obj":"Body_part"}],"attributes":[{"id":"A169","pred":"fma_id","subj":"T169","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A170","pred":"fma_id","subj":"T170","obj":"http://purl.org/sig/ont/fma/fma242660"},{"id":"A171","pred":"fma_id","subj":"T171","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A172","pred":"fma_id","subj":"T172","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A173","pred":"fma_id","subj":"T173","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A174","pred":"fma_id","subj":"T174","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A175","pred":"fma_id","subj":"T175","obj":"http://purl.org/sig/ont/fma/fma23463"},{"id":"A176","pred":"fma_id","subj":"T176","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A177","pred":"fma_id","subj":"T177","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A178","pred":"fma_id","subj":"T178","obj":"http://purl.org/sig/ont/fma/fma9637"}],"text":"The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions. Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods). For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d. Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e. This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T158","span":{"begin":717,"end":723},"obj":"Body_part"}],"attributes":[{"id":"A158","pred":"uberon_id","subj":"T158","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"}],"text":"The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions. Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods). For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d. Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e. This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T238","span":{"begin":26,"end":34},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T239","span":{"begin":100,"end":101},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T240","span":{"begin":162,"end":163},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T241","span":{"begin":274,"end":278},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T242","span":{"begin":353,"end":357},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T243","span":{"begin":373,"end":374},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T244","span":{"begin":387,"end":388},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T245","span":{"begin":420,"end":424},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T246","span":{"begin":445,"end":446},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T247","span":{"begin":478,"end":482},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T248","span":{"begin":498,"end":499},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T249","span":{"begin":539,"end":543},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T250","span":{"begin":587,"end":591},"obj":"http://purl.obolibrary.org/obo/CLO_0001185"},{"id":"T251","span":{"begin":621,"end":626},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T252","span":{"begin":683,"end":684},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions. Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods). For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d. Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e. This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T25","span":{"begin":35,"end":44},"obj":"http://purl.obolibrary.org/obo/GO_0009058"},{"id":"T26","span":{"begin":279,"end":291},"obj":"http://purl.obolibrary.org/obo/GO_0035282"}],"text":"The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions. Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods). For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d. Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e. This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g."}

{"project":"LitCovid-sentences","denotations":[{"id":"T192","span":{"begin":0,"end":207},"obj":"Sentence"},{"id":"T193","span":{"begin":208,"end":320},"obj":"Sentence"},{"id":"T194","span":{"begin":321,"end":449},"obj":"Sentence"},{"id":"T195","span":{"begin":450,"end":646},"obj":"Sentence"},{"id":"T196","span":{"begin":647,"end":754},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions. Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods). For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d. Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e. This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g."}

{"project":"2_test","denotations":[{"id":"32815517-29915047-26997863","span":{"begin":587,"end":591},"obj":"29915047"}],"text":"The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions. Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods). For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d. Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e. This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g."}

{"project":"MyTest","denotations":[{"id":"32815517-29915047-26997863","span":{"begin":587,"end":591},"obj":"29915047"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"text":"The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions. Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods). For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d. Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e. This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g."}

{"project":"LitCovid-PubTator","denotations":[{"id":"241","span":{"begin":149,"end":156},"obj":"Species"}],"attributes":[{"id":"A241","pred":"tao:has_database_id","subj":"241","obj":"Tax:9606"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"The severeness of hyaline membrane formation is case-specific, as the yellow rendering in Figure 8a,b,d demonstrates reduced amounts of deposits for patient I in a subvolume of parallel-beam reconstructions. Further, lymphocytes (red) were identified based on the automated cell segmentation (see Materials and methods). For clearer visualization, each cell is rendered as a sphere with a size corresponding to the mean cell volume in Figure 8a,b,d. Based on convolution of the cell positions with a sphere of 100⁢μ⁢m in radius, the local cell density was calculated (Töpperwien et al., 2018) and presented as 3D-maps of cells/mm3 in Figure 8c,e. This concept was then translated to a 3D-stitched volume of an entire tissue block as shown in Figure 8f,g."}