PMC:7464116 / 7146-8176
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T17 | 120-127 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T18 | 132-137 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T19 | 245-251 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T20 | 289-294 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T21 | 392-398 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T22 | 655-661 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T23 | 742-748 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T14 | 132-137 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T15 | 245-251 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T16 | 289-294 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T17 | 392-398 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T18 | 655-661 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T19 | 742-748 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T101 | 210-218 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T102 | 517-528 | Disease | denotes | proteinuria | http://purl.obolibrary.org/obo/MONDO_0003634 |
| T103 | 555-566 | Disease | denotes | proteinuria | http://purl.obolibrary.org/obo/MONDO_0003634 |
| T104 | 598-609 | Disease | denotes | proteinuria | http://purl.obolibrary.org/obo/MONDO_0003634 |
| T105 | 719-727 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T106 | 968-971 | Disease | denotes | CKD | http://purl.obolibrary.org/obo/MONDO_0005300 |
| T107 | 1011-1019 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T108 | 1020-1029 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T90 | 245-251 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T91 | 245-251 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T92 | 245-251 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T93 | 289-294 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T94 | 289-294 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T95 | 392-398 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T96 | 392-398 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T97 | 392-398 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T98 | 655-661 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T99 | 655-661 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T100 | 655-661 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T101 | 742-748 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T102 | 742-748 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T103 | 742-748 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T104 | 845-853 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | be males |
| T105 | 845-853 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | be males |
| T106 | 882-883 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T107 | 928-929 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T108 | 949-952 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 120-127 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T2 | 138-145 | Chemical | denotes | lactose | http://purl.obolibrary.org/obo/CHEBI_17716 |
| T3 | 295-299 | Chemical | denotes | urea | http://purl.obolibrary.org/obo/CHEBI_16199 |
| T4 | 300-308 | Chemical | denotes | nitrogen | http://purl.obolibrary.org/obo/CHEBI_25555 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 330-351 | http://purl.obolibrary.org/obo/GO_0003094 | denotes | glomerular filtration |
| T4 | 358-362 | http://purl.obolibrary.org/obo/GO_0005006 | denotes | eGFR |
| T5 | 890-901 | http://purl.obolibrary.org/obo/GO_0050817 | denotes | coagulation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T49 | 0-164 | Sentence | denotes | Most patients also showed an inflammatory status and coagulopathies with elevated levels of high-sensitivity C-reactive protein and serum lactose dehydrogenase [8]. |
| T50 | 165-408 | Sentence | denotes | Interestingly, up to 15% of the hospitalized COVID-19 patients had at least one kidney abnormality represented by increased blood urea nitrogen or reduced estimated glomerular filtration rate (eGFR) which is the best marker of kidney function. |
| T51 | 409-675 | Sentence | denotes | Moreover, findings from different cohorts of hospitalized patients showed that 26–63% of patients presented proteinuria at admission or developed proteinuria during their stay in hospital, proteinuria being considered the most recognized sign of kidney damage [7,8]. |
| T52 | 676-914 | Sentence | denotes | An individual risk profile also found that COVID-19 patients with kidney abnormalities, compared with those with normal renal function at admission, were more likely to be males, with advanced age and with a worse coagulation profile [8]. |
| T53 | 915-1030 | Sentence | denotes | In addition, a meta-analysis [21] has confirmed that CKD is associated with an enhanced risk of COVID-19 infection. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T37 | 53-67 | Phenotype | denotes | coagulopathies | http://purl.obolibrary.org/obo/HP_0003256 |
| T38 | 279-308 | Phenotype | denotes | increased blood urea nitrogen | http://purl.obolibrary.org/obo/HP_0003138 |
| T39 | 517-528 | Phenotype | denotes | proteinuria | http://purl.obolibrary.org/obo/HP_0000093 |
| T40 | 555-566 | Phenotype | denotes | proteinuria | http://purl.obolibrary.org/obo/HP_0000093 |
| T41 | 598-609 | Phenotype | denotes | proteinuria | http://purl.obolibrary.org/obo/HP_0000093 |
| T42 | 655-668 | Phenotype | denotes | kidney damage | http://purl.obolibrary.org/obo/HP_0000112 |
| T43 | 968-971 | Phenotype | denotes | CKD | http://purl.obolibrary.org/obo/HP_0012622 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 237 | 109-127 | Gene | denotes | C-reactive protein | Gene:1401 |
| 238 | 5-13 | Species | denotes | patients | Tax:9606 |
| 239 | 219-227 | Species | denotes | patients | Tax:9606 |
| 240 | 467-475 | Species | denotes | patients | Tax:9606 |
| 241 | 498-506 | Species | denotes | patients | Tax:9606 |
| 242 | 728-736 | Species | denotes | patients | Tax:9606 |
| 243 | 138-145 | Chemical | denotes | lactose | MESH:D007785 |
| 244 | 295-299 | Chemical | denotes | urea | MESH:D014508 |
| 245 | 300-308 | Chemical | denotes | nitrogen | MESH:D009584 |
| 246 | 53-67 | Disease | denotes | coagulopathies | MESH:D001778 |
| 247 | 210-218 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 248 | 245-263 | Disease | denotes | kidney abnormality | MESH:D007674 |
| 249 | 517-528 | Disease | denotes | proteinuria | MESH:D011507 |
| 250 | 555-566 | Disease | denotes | proteinuria | MESH:D011507 |
| 251 | 598-609 | Disease | denotes | proteinuria | MESH:D011507 |
| 252 | 655-668 | Disease | denotes | kidney damage | MESH:D007674 |
| 253 | 719-727 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 254 | 742-762 | Disease | denotes | kidney abnormalities | MESH:D007674 |
| 255 | 968-971 | Disease | denotes | CKD | MESH:D012080 |
| 256 | 1011-1019 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 257 | 1020-1029 | Disease | denotes | infection | MESH:D007239 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32759645-32335410-58096149 | 670-671 | 32335410 | denotes | 7 |