PMC:7464116 / 51335-53274
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T336 | 49-54 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T337 | 83-88 | Body_part | denotes | urine | http://purl.org/sig/ont/fma/fma12274 |
| T338 | 1318-1323 | Body_part | denotes | Urine | http://purl.org/sig/ont/fma/fma12274 |
| T339 | 1624-1630 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T340 | 1838-1844 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T163 | 49-54 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T164 | 83-88 | Body_part | denotes | urine | http://purl.obolibrary.org/obo/UBERON_0001088 |
| T165 | 1318-1323 | Body_part | denotes | Urine | http://purl.obolibrary.org/obo/UBERON_0001088 |
| T166 | 1624-1630 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T167 | 1838-1844 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T555 | 27-30 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T556 | 322-330 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T557 | 373-385 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
| T558 | 393-401 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
| T559 | 493-496 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T560 | 668-679 | Disease | denotes | proteinuria | http://purl.obolibrary.org/obo/MONDO_0003634 |
| T561 | 695-698 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T562 | 783-794 | Disease | denotes | proteinuria | http://purl.obolibrary.org/obo/MONDO_0003634 |
| T563 | 864-872 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T564 | 873-882 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T565 | 944-947 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T566 | 979-990 | Disease | denotes | proteinuria | http://purl.obolibrary.org/obo/MONDO_0003634 |
| T567 | 1027-1030 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T568 | 1087-1090 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T569 | 1265-1273 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T570 | 1307-1316 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T571 | 1370-1381 | Disease | denotes | proteinuria | http://purl.obolibrary.org/obo/MONDO_0003634 |
| T572 | 1457-1460 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T573 | 1534-1537 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T574 | 1569-1577 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
| T575 | 1907-1915 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T674 | 339-344 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | Males |
| T675 | 339-344 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | Males |
| T676 | 452-453 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T677 | 598-599 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T678 | 761-762 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T679 | 952-953 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T680 | 1205-1206 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T681 | 1333-1340 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T682 | 1624-1630 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T683 | 1624-1630 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T684 | 1624-1630 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T685 | 1838-1844 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T686 | 1838-1844 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T687 | 1838-1844 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T97886 | 55-65 | Chemical | denotes | creatinine | http://purl.obolibrary.org/obo/CHEBI_16737 |
| T20883 | 1031-1036 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T305 | 0-167 | Sentence | denotes | The standard assessment of AKI is still based on serum creatinine levels and daily urine output, but these represent only indicators of established renal damage [111]. |
| T306 | 168-338 | Sentence | denotes | Recently, Richardson et al. enrolled in the New York City Area (U.S.A.), the largest number of cases of sequentially hospitalized patients with confirmed COVID-19 in USA. |
| T307 | 339-477 | Sentence | denotes | Males and those with pre-existing hypertension and/or diabetes were highly prevalent among 5700 case series with a median age of 63 years. |
| T308 | 478-574 | Sentence | denotes | In this study, AKI was observed among 8.4% discharged live patients and among 63% dead patients. |
| T309 | 575-694 | Sentence | denotes | On hospital admission, a significant percentage of patients had renal impairment, presenting proteinuria and hematuria. |
| T310 | 695-760 | Sentence | denotes | AKI incidence in the overall cohort was in the range of 4.7–7.5%. |
| T311 | 761-883 | Sentence | denotes | A higher incidence of proteinuria and hematuria was reported in patients with severe or critically ill COVID-19 pneumonia. |
| T312 | 884-1037 | Sentence | denotes | Among all patients with renal impairment, the patients with AKI had a higher incidence rate of proteinuria and hematuria compared with the non-AKI group. |
| T313 | 1038-1174 | Sentence | denotes | Almost 50% of the critically ill cases developed AKI during hospitalization, especially those who were in the intensive care unit (ICU). |
| T314 | 1175-1317 | Sentence | denotes | Patients were followed up for a median duration of 12 days, during which time most of the COVID-19 patients showed remission of the pneumonia. |
| T315 | 1318-1438 | Sentence | denotes | Urine dipstick testing in most of the patients with proteinuria and hematuria were reported as negative after follow-up. |
| T316 | 1439-1492 | Sentence | denotes | The mean time for AKI recovery was seen to be 6 days. |
| T317 | 1493-1578 | Sentence | denotes | The percentage of patients who developed AKI was increased in patients with diabetes. |
| T318 | 1579-1783 | Sentence | denotes | In conclusion, despite the high morbidity of kidney impairment, the short-term renal prognosis of those patients is still good: in fact 50% achieved remission in 3 weeks after the onset of their symptoms. |
| T319 | 1784-1939 | Sentence | denotes | However, adverse short-term outcomes of patients with kidney impairment are also associated with high rate of mortality in COVID-19 infected patients [15]. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T231 | 27-30 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T232 | 373-385 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
| T233 | 493-496 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T234 | 668-679 | Phenotype | denotes | proteinuria | http://purl.obolibrary.org/obo/HP_0000093 |
| T235 | 684-693 | Phenotype | denotes | hematuria | http://purl.obolibrary.org/obo/HP_0000790 |
| T236 | 695-698 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T237 | 783-794 | Phenotype | denotes | proteinuria | http://purl.obolibrary.org/obo/HP_0000093 |
| T238 | 799-808 | Phenotype | denotes | hematuria | http://purl.obolibrary.org/obo/HP_0000790 |
| T239 | 873-882 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T240 | 944-947 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T241 | 979-990 | Phenotype | denotes | proteinuria | http://purl.obolibrary.org/obo/HP_0000093 |
| T242 | 995-1004 | Phenotype | denotes | hematuria | http://purl.obolibrary.org/obo/HP_0000790 |
| T243 | 1027-1030 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T244 | 1087-1090 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T245 | 1307-1316 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T246 | 1370-1381 | Phenotype | denotes | proteinuria | http://purl.obolibrary.org/obo/HP_0000093 |
| T247 | 1386-1395 | Phenotype | denotes | hematuria | http://purl.obolibrary.org/obo/HP_0000790 |
| T248 | 1457-1460 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T249 | 1534-1537 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1659 | 298-306 | Species | denotes | patients | Tax:9606 |
| 1660 | 537-545 | Species | denotes | patients | Tax:9606 |
| 1661 | 565-573 | Species | denotes | patients | Tax:9606 |
| 1662 | 626-634 | Species | denotes | patients | Tax:9606 |
| 1663 | 825-833 | Species | denotes | patients | Tax:9606 |
| 1664 | 894-902 | Species | denotes | patients | Tax:9606 |
| 1665 | 930-938 | Species | denotes | patients | Tax:9606 |
| 1666 | 1175-1183 | Species | denotes | Patients | Tax:9606 |
| 1667 | 1274-1282 | Species | denotes | patients | Tax:9606 |
| 1668 | 1356-1364 | Species | denotes | patients | Tax:9606 |
| 1669 | 1511-1519 | Species | denotes | patients | Tax:9606 |
| 1670 | 1555-1563 | Species | denotes | patients | Tax:9606 |
| 1671 | 1683-1691 | Species | denotes | patients | Tax:9606 |
| 1672 | 1824-1832 | Species | denotes | patients | Tax:9606 |
| 1673 | 1925-1933 | Species | denotes | patients | Tax:9606 |
| 1674 | 55-65 | Chemical | denotes | creatinine | MESH:D003404 |
| 1675 | 148-160 | Disease | denotes | renal damage | MESH:D007674 |
| 1676 | 322-330 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1677 | 373-385 | Disease | denotes | hypertension | MESH:D006973 |
| 1678 | 393-401 | Disease | denotes | diabetes | MESH:D003920 |
| 1679 | 639-655 | Disease | denotes | renal impairment | MESH:D007674 |
| 1680 | 668-679 | Disease | denotes | proteinuria | MESH:D011507 |
| 1681 | 684-693 | Disease | denotes | hematuria | MESH:D006417 |
| 1682 | 783-794 | Disease | denotes | proteinuria | MESH:D011507 |
| 1683 | 799-808 | Disease | denotes | hematuria | MESH:D006417 |
| 1684 | 849-863 | Disease | denotes | critically ill | MESH:D016638 |
| 1685 | 864-882 | Disease | denotes | COVID-19 pneumonia | MESH:C000657245 |
| 1686 | 908-924 | Disease | denotes | renal impairment | MESH:D007674 |
| 1687 | 979-990 | Disease | denotes | proteinuria | MESH:D011507 |
| 1688 | 995-1004 | Disease | denotes | hematuria | MESH:D006417 |
| 1689 | 1056-1070 | Disease | denotes | critically ill | MESH:D016638 |
| 1690 | 1265-1273 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1691 | 1307-1316 | Disease | denotes | pneumonia | MESH:D011014 |
| 1692 | 1370-1381 | Disease | denotes | proteinuria | MESH:D011507 |
| 1693 | 1386-1395 | Disease | denotes | hematuria | MESH:D006417 |
| 1694 | 1569-1577 | Disease | denotes | diabetes | MESH:D003920 |
| 1695 | 1624-1641 | Disease | denotes | kidney impairment | MESH:D007674 |
| 1696 | 1838-1855 | Disease | denotes | kidney impairment | MESH:D007674 |
| 1697 | 1894-1903 | Disease | denotes | mortality | MESH:D003643 |
| 1698 | 1907-1915 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1699 | 1916-1924 | Disease | denotes | infected | MESH:D007239 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32759645-32299479-58096240 | 162-165 | 32299479 | denotes | 111 |
| 32759645-32320003-58096241 | 1935-1937 | 32320003 | denotes | 15 |