PMC:7461420 / 37460-38595 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7461420","sourcedb":"PMC","sourceid":"7461420","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7461420","text":"3.1.2 Substrate‐derived Mpro inhibitors\nTo date, no approved drugs or vaccines are available for treating a coronavirus infection. In a race to identify chemotherapeutic options, various approaches, such as chemical synthesis, testing of natural products, and virtual screening of compound libraries, have been used. The systematic design of inhibitors of CoV Mpro was essentially based on the enzyme's substrate. In general, a substrate can be transformed into a good inhibitor by modifying part of its sequence such that it binds to the catalytic cysteine in either a reversible or an irreversible manner. Peptide inhibitors are designed by attaching a reactive group (also known as warhead group) to peptides that mimic the natural substrate. The partial peptide substrate sequence for SARS‐CoV‐1 Mpro is mentioned in Figure 10, indicating the specific subsite of each amino acid residue.\nFigure 10 A, SARS‐CoV‐1 Mpro partial substrate sequence. B, (Overlay) structures of SARS‐CoV Mpro inhibitors. Mpro, main protease; SARS‐CoV, severe acute respiratory syndrome coronavirus [Color figure can be viewed at wileyonlinelibrary.com]","divisions":[{"label":"label","span":{"begin":0,"end":5}},{"label":"title","span":{"begin":7,"end":40}},{"label":"p","span":{"begin":41,"end":892}},{"label":"label","span":{"begin":893,"end":902}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T201","span":{"begin":550,"end":558},"obj":"Body_part"},{"id":"T202","span":{"begin":873,"end":883},"obj":"Body_part"}],"attributes":[{"id":"A201","pred":"fma_id","subj":"T201","obj":"http://purl.org/sig/ont/fma/fma82751"},{"id":"A202","pred":"fma_id","subj":"T202","obj":"http://purl.org/sig/ont/fma/fma82739"},{"subj":"T201","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T202","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T204","span":{"begin":121,"end":130},"obj":"Disease"},{"id":"T205","span":{"begin":790,"end":794},"obj":"Disease"},{"id":"T206","span":{"begin":907,"end":911},"obj":"Disease"},{"id":"T207","span":{"begin":978,"end":982},"obj":"Disease"},{"id":"T208","span":{"begin":1025,"end":1029},"obj":"Disease"},{"id":"T209","span":{"begin":1035,"end":1068},"obj":"Disease"}],"attributes":[{"id":"A204","pred":"mondo_id","subj":"T204","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A205","pred":"mondo_id","subj":"T205","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A206","pred":"mondo_id","subj":"T206","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A207","pred":"mondo_id","subj":"T207","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A208","pred":"mondo_id","subj":"T208","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A209","pred":"mondo_id","subj":"T209","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T204","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T205","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T206","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T207","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T208","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T209","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T437","span":{"begin":107,"end":108},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T438","span":{"begin":135,"end":136},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T439","span":{"begin":228,"end":235},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T440","span":{"begin":427,"end":428},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T441","span":{"begin":463,"end":464},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T442","span":{"begin":569,"end":570},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T443","span":{"begin":609,"end":616},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T444","span":{"begin":654,"end":655},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T445","span":{"begin":704,"end":712},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T446","span":{"begin":759,"end":766},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T447","span":{"begin":873,"end":891},"obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"T448","span":{"begin":873,"end":891},"obj":"http://purl.obolibrary.org/obo/PR_000036907"},{"id":"T449","span":{"begin":904,"end":905},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T450","span":{"begin":951,"end":952},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"}],"attributes":[{"subj":"T437","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T438","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T439","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T440","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T441","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T442","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T443","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T444","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T445","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T446","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T447","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T448","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T449","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T450","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T336","span":{"begin":25,"end":40},"obj":"Chemical"},{"id":"T337","span":{"begin":30,"end":40},"obj":"Chemical"},{"id":"T338","span":{"begin":62,"end":67},"obj":"Chemical"},{"id":"T339","span":{"begin":343,"end":353},"obj":"Chemical"},{"id":"T340","span":{"begin":470,"end":479},"obj":"Chemical"},{"id":"T341","span":{"begin":550,"end":558},"obj":"Chemical"},{"id":"T342","span":{"begin":609,"end":616},"obj":"Chemical"},{"id":"T343","span":{"begin":617,"end":627},"obj":"Chemical"},{"id":"T344","span":{"begin":665,"end":670},"obj":"Chemical"},{"id":"T345","span":{"begin":694,"end":699},"obj":"Chemical"},{"id":"T346","span":{"begin":704,"end":712},"obj":"Chemical"},{"id":"T347","span":{"begin":759,"end":766},"obj":"Chemical"},{"id":"T348","span":{"begin":873,"end":891},"obj":"Chemical"},{"id":"T349","span":{"begin":873,"end":883},"obj":"Chemical"},{"id":"T350","span":{"begin":873,"end":878},"obj":"Chemical"},{"id":"T351","span":{"begin":879,"end":883},"obj":"Chemical"},{"id":"T352","span":{"begin":987,"end":1002},"obj":"Chemical"},{"id":"T353","span":{"begin":992,"end":1002},"obj":"Chemical"}],"attributes":[{"id":"A336","pred":"chebi_id","subj":"T336","obj":"http://purl.obolibrary.org/obo/CHEBI_147285"},{"id":"A337","pred":"chebi_id","subj":"T337","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"id":"A338","pred":"chebi_id","subj":"T338","obj":"http://purl.obolibrary.org/obo/CHEBI_23888"},{"id":"A339","pred":"chebi_id","subj":"T339","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"id":"A340","pred":"chebi_id","subj":"T340","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"id":"A341","pred":"chebi_id","subj":"T341","obj":"http://purl.obolibrary.org/obo/CHEBI_15356"},{"id":"A342","pred":"chebi_id","subj":"T342","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A343","pred":"chebi_id","subj":"T343","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"id":"A344","pred":"chebi_id","subj":"T344","obj":"http://purl.obolibrary.org/obo/CHEBI_24433"},{"id":"A345","pred":"chebi_id","subj":"T345","obj":"http://purl.obolibrary.org/obo/CHEBI_24433"},{"id":"A346","pred":"chebi_id","subj":"T346","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A347","pred":"chebi_id","subj":"T347","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A348","pred":"chebi_id","subj":"T348","obj":"http://purl.obolibrary.org/obo/CHEBI_33708"},{"id":"A349","pred":"chebi_id","subj":"T349","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A350","pred":"chebi_id","subj":"T350","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A351","pred":"chebi_id","subj":"T351","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"},{"id":"A352","pred":"chebi_id","subj":"T352","obj":"http://purl.obolibrary.org/obo/CHEBI_147285"},{"id":"A353","pred":"chebi_id","subj":"T353","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"subj":"T336","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T337","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T338","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T339","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T340","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T341","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T342","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T343","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T344","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T345","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T346","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T347","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T348","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T349","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T350","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T351","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T352","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T353","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T56","span":{"begin":217,"end":226},"obj":"http://purl.obolibrary.org/obo/GO_0009058"}],"attributes":[{"subj":"T56","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"1153","span":{"begin":25,"end":29},"obj":"Gene"},{"id":"1160","span":{"begin":801,"end":805},"obj":"Gene"},{"id":"1161","span":{"begin":361,"end":365},"obj":"Gene"},{"id":"1162","span":{"begin":357,"end":360},"obj":"Species"},{"id":"1163","span":{"begin":790,"end":798},"obj":"Species"},{"id":"1164","span":{"begin":550,"end":558},"obj":"Chemical"},{"id":"1165","span":{"begin":109,"end":130},"obj":"Disease"},{"id":"1173","span":{"begin":1004,"end":1008},"obj":"Gene"},{"id":"1174","span":{"begin":987,"end":991},"obj":"Gene"},{"id":"1175","span":{"begin":918,"end":922},"obj":"Gene"},{"id":"1176","span":{"begin":907,"end":915},"obj":"Species"},{"id":"1177","span":{"begin":978,"end":986},"obj":"Species"},{"id":"1178","span":{"begin":1025,"end":1033},"obj":"Species"},{"id":"1179","span":{"begin":1035,"end":1080},"obj":"Species"}],"attributes":[{"id":"A1153","pred":"tao:has_database_id","subj":"1153","obj":"Gene:8673700"},{"id":"A1160","pred":"tao:has_database_id","subj":"1160","obj":"Gene:8673700"},{"id":"A1161","pred":"tao:has_database_id","subj":"1161","obj":"Gene:8673700"},{"id":"A1162","pred":"tao:has_database_id","subj":"1162","obj":"Tax:11118"},{"id":"A1163","pred":"tao:has_database_id","subj":"1163","obj":"Tax:694009"},{"id":"A1164","pred":"tao:has_database_id","subj":"1164","obj":"MESH:D003545"},{"id":"A1165","pred":"tao:has_database_id","subj":"1165","obj":"MESH:D018352"},{"id":"A1173","pred":"tao:has_database_id","subj":"1173","obj":"Gene:8673700"},{"id":"A1174","pred":"tao:has_database_id","subj":"1174","obj":"Gene:8673700"},{"id":"A1175","pred":"tao:has_database_id","subj":"1175","obj":"Gene:8673700"},{"id":"A1176","pred":"tao:has_database_id","subj":"1176","obj":"Tax:694009"},{"id":"A1177","pred":"tao:has_database_id","subj":"1177","obj":"Tax:694009"},{"id":"A1178","pred":"tao:has_database_id","subj":"1178","obj":"Tax:694009"},{"id":"A1179","pred":"tao:has_database_id","subj":"1179","obj":"Tax:694009"},{"subj":"1153","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1160","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1161","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1162","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1163","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1164","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1165","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1173","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1174","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1175","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1176","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1177","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1178","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1179","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T347","span":{"begin":0,"end":40},"obj":"Sentence"},{"id":"T348","span":{"begin":41,"end":131},"obj":"Sentence"},{"id":"T349","span":{"begin":132,"end":317},"obj":"Sentence"},{"id":"T350","span":{"begin":318,"end":414},"obj":"Sentence"},{"id":"T351","span":{"begin":415,"end":608},"obj":"Sentence"},{"id":"T352","span":{"begin":609,"end":746},"obj":"Sentence"},{"id":"T353","span":{"begin":747,"end":892},"obj":"Sentence"},{"id":"T354","span":{"begin":893,"end":950},"obj":"Sentence"},{"id":"T355","span":{"begin":951,"end":1003},"obj":"Sentence"},{"id":"T356","span":{"begin":1004,"end":1135},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T347","pred":"source","obj":"LitCovid-sentences"},{"subj":"T348","pred":"source","obj":"LitCovid-sentences"},{"subj":"T349","pred":"source","obj":"LitCovid-sentences"},{"subj":"T350","pred":"source","obj":"LitCovid-sentences"},{"subj":"T351","pred":"source","obj":"LitCovid-sentences"},{"subj":"T352","pred":"source","obj":"LitCovid-sentences"},{"subj":"T353","pred":"source","obj":"LitCovid-sentences"},{"subj":"T354","pred":"source","obj":"LitCovid-sentences"},{"subj":"T355","pred":"source","obj":"LitCovid-sentences"},{"subj":"T356","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ecb593","default":true},{"id":"LitCovid-PD-MONDO","color":"#9b93ec"},{"id":"LitCovid-PD-CLO","color":"#a4ec93"},{"id":"LitCovid-PD-CHEBI","color":"#ec93be"},{"id":"LitCovid-PD-GO-BP","color":"#93d8ec"},{"id":"LitCovid-PubTator","color":"#ece693"},{"id":"LitCovid-sentences","color":"#cc93ec"}]}]}}