PMC:7456455 / 7989-8913 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7456455","sourcedb":"PMC","sourceid":"7456455","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7456455","text":"ig. 2 Decision points that determine the outcome of COVID-19 infection and requirements for a monocyte activation assay. A time and severity pattern has emerged for COVID-19 progression. The first days, first and second week timelines are turning points for resolution or deterioration. Epidemiologic precision for these milestones and precise parameters will be valuable for strategic sampling and patient stratification, sparing resources and patient material. With limited volumes of peripheral blood, a window on progression of the infection can be obtained by studying activation of the mononuclear phagocyte system, largely represented by monocytes in blood. The cells are biosynthetically active and relatively long lived, ideal to trace long term effects of comorbidities and infection. We highlight selected functional categories that should be addressed in monocytes and can be adapted to particular applications.\n","divisions":[{"label":"label","span":{"begin":0,"end":6}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T100","span":{"begin":94,"end":102},"obj":"Body_part"},{"id":"T101","span":{"begin":498,"end":503},"obj":"Body_part"},{"id":"T102","span":{"begin":592,"end":620},"obj":"Body_part"},{"id":"T103","span":{"begin":645,"end":654},"obj":"Body_part"},{"id":"T104","span":{"begin":658,"end":663},"obj":"Body_part"},{"id":"T105","span":{"begin":669,"end":674},"obj":"Body_part"},{"id":"T106","span":{"begin":867,"end":876},"obj":"Body_part"}],"attributes":[{"id":"A100","pred":"fma_id","subj":"T100","obj":"http://purl.org/sig/ont/fma/fma62864"},{"id":"A101","pred":"fma_id","subj":"T101","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A102","pred":"fma_id","subj":"T102","obj":"http://purl.org/sig/ont/fma/fma84189"},{"id":"A103","pred":"fma_id","subj":"T103","obj":"http://purl.org/sig/ont/fma/fma62864"},{"id":"A104","pred":"fma_id","subj":"T104","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A105","pred":"fma_id","subj":"T105","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A106","pred":"fma_id","subj":"T106","obj":"http://purl.org/sig/ont/fma/fma62864"},{"subj":"T100","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T101","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T102","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T103","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T104","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T105","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T106","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T23","span":{"begin":498,"end":503},"obj":"Body_part"},{"id":"T24","span":{"begin":658,"end":663},"obj":"Body_part"}],"attributes":[{"id":"A23","pred":"uberon_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A24","pred":"uberon_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T47","span":{"begin":52,"end":60},"obj":"Disease"},{"id":"T48","span":{"begin":61,"end":70},"obj":"Disease"},{"id":"T49","span":{"begin":165,"end":173},"obj":"Disease"},{"id":"T50","span":{"begin":536,"end":545},"obj":"Disease"},{"id":"T51","span":{"begin":784,"end":793},"obj":"Disease"}],"attributes":[{"id":"A47","pred":"mondo_id","subj":"T47","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A48","pred":"mondo_id","subj":"T48","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A49","pred":"mondo_id","subj":"T49","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A51","pred":"mondo_id","subj":"T51","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T47","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T48","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T49","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T50","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T51","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T134","span":{"begin":92,"end":93},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T135","span":{"begin":94,"end":102},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T136","span":{"begin":103,"end":113},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T137","span":{"begin":121,"end":122},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T138","span":{"begin":149,"end":152},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T139","span":{"begin":498,"end":503},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T140","span":{"begin":498,"end":503},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T141","span":{"begin":505,"end":506},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T142","span":{"begin":574,"end":584},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T143","span":{"begin":592,"end":613},"obj":"http://purl.obolibrary.org/obo/CL_0000113"},{"id":"T144","span":{"begin":645,"end":654},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T145","span":{"begin":658,"end":663},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T146","span":{"begin":658,"end":663},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T147","span":{"begin":669,"end":674},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T148","span":{"begin":696,"end":702},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T149","span":{"begin":867,"end":876},"obj":"http://purl.obolibrary.org/obo/CL_0000576"}],"attributes":[{"subj":"T134","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T135","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T136","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T137","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T138","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T139","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T140","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T141","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T142","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T143","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T144","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T145","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T146","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T147","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T148","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T149","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T33","span":{"begin":94,"end":113},"obj":"http://purl.obolibrary.org/obo/GO_0042117"}],"attributes":[{"subj":"T33","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T50","span":{"begin":121,"end":186},"obj":"Sentence"},{"id":"T51","span":{"begin":187,"end":286},"obj":"Sentence"},{"id":"T52","span":{"begin":287,"end":462},"obj":"Sentence"},{"id":"T53","span":{"begin":463,"end":664},"obj":"Sentence"},{"id":"T54","span":{"begin":665,"end":794},"obj":"Sentence"},{"id":"T55","span":{"begin":795,"end":923},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T50","pred":"source","obj":"LitCovid-sentences"},{"subj":"T51","pred":"source","obj":"LitCovid-sentences"},{"subj":"T52","pred":"source","obj":"LitCovid-sentences"},{"subj":"T53","pred":"source","obj":"LitCovid-sentences"},{"subj":"T54","pred":"source","obj":"LitCovid-sentences"},{"subj":"T55","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T223","span":{"begin":52,"end":60},"obj":"SP_7"},{"id":"T224","span":{"begin":94,"end":102},"obj":"CL:0000576"},{"id":"T225","span":{"begin":165,"end":173},"obj":"SP_7"},{"id":"T226","span":{"begin":498,"end":503},"obj":"UBERON:0000178"},{"id":"T227","span":{"begin":592,"end":603},"obj":"GO:0005634;CL:0000113"},{"id":"T228","span":{"begin":604,"end":613},"obj":"CL:0000113"},{"id":"T229","span":{"begin":645,"end":654},"obj":"CL:0000576"},{"id":"T230","span":{"begin":658,"end":663},"obj":"UBERON:0000178"},{"id":"T231","span":{"begin":867,"end":876},"obj":"CL:0000576"}],"attributes":[{"subj":"T223","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T224","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T225","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T226","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T227","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T228","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T229","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T230","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T231","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"141","span":{"begin":399,"end":406},"obj":"Species"},{"id":"142","span":{"begin":445,"end":452},"obj":"Species"},{"id":"143","span":{"begin":52,"end":60},"obj":"Disease"},{"id":"144","span":{"begin":61,"end":70},"obj":"Disease"},{"id":"145","span":{"begin":165,"end":173},"obj":"Disease"},{"id":"146","span":{"begin":536,"end":545},"obj":"Disease"},{"id":"147","span":{"begin":784,"end":793},"obj":"Disease"}],"attributes":[{"id":"A141","pred":"tao:has_database_id","subj":"141","obj":"Tax:9606"},{"id":"A142","pred":"tao:has_database_id","subj":"142","obj":"Tax:9606"},{"id":"A143","pred":"tao:has_database_id","subj":"143","obj":"MESH:C000657245"},{"id":"A144","pred":"tao:has_database_id","subj":"144","obj":"MESH:D007239"},{"id":"A145","pred":"tao:has_database_id","subj":"145","obj":"MESH:C000657245"},{"id":"A146","pred":"tao:has_database_id","subj":"146","obj":"MESH:D007239"},{"id":"A147","pred":"tao:has_database_id","subj":"147","obj":"MESH:D007239"},{"subj":"141","pred":"source","obj":"LitCovid-PubTator"},{"subj":"142","pred":"source","obj":"LitCovid-PubTator"},{"subj":"143","pred":"source","obj":"LitCovid-PubTator"},{"subj":"144","pred":"source","obj":"LitCovid-PubTator"},{"subj":"145","pred":"source","obj":"LitCovid-PubTator"},{"subj":"146","pred":"source","obj":"LitCovid-PubTator"},{"subj":"147","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#9396ec","default":true},{"id":"LitCovid-PD-UBERON","color":"#b0ec93"},{"id":"LitCovid-PD-MONDO","color":"#ec93cb"},{"id":"LitCovid-PD-CLO","color":"#93e5ec"},{"id":"LitCovid-PD-GO-BP","color":"#ecd993"},{"id":"LitCovid-sentences","color":"#bf93ec"},{"id":"LitCovid-PMC-OGER-BB","color":"#93eca5"},{"id":"LitCovid-PubTator","color":"#ec939a"}]}]}}