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LitCovid-PD-FMA-UBERON

LitCovid-PD-UBERON

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T71","span":{"begin":114,"end":119},"obj":"Body_part"},{"id":"T72","span":{"begin":124,"end":130},"obj":"Body_part"},{"id":"T73","span":{"begin":261,"end":267},"obj":"Body_part"},{"id":"T74","span":{"begin":494,"end":498},"obj":"Body_part"},{"id":"T75","span":{"begin":1191,"end":1200},"obj":"Body_part"}],"attributes":[{"id":"A71","pred":"uberon_id","subj":"T71","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A72","pred":"uberon_id","subj":"T72","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"},{"id":"A73","pred":"uberon_id","subj":"T73","obj":"http://purl.obolibrary.org/obo/UBERON_0000062"},{"id":"A74","pred":"uberon_id","subj":"T74","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A75","pred":"uberon_id","subj":"T75","obj":"http://purl.obolibrary.org/obo/UBERON_0000483"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T145","span":{"begin":63,"end":67},"obj":"Disease"},{"id":"T146","span":{"begin":143,"end":151},"obj":"Disease"},{"id":"T147","span":{"begin":274,"end":278},"obj":"Disease"},{"id":"T148","span":{"begin":584,"end":596},"obj":"Disease"}],"attributes":[{"id":"A145","pred":"mondo_id","subj":"T145","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A146","pred":"mondo_id","subj":"T146","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A147","pred":"mondo_id","subj":"T147","obj":"http://purl.obolibrary.org/obo/MONDO_0018262"},{"id":"A148","pred":"mondo_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/MONDO_0021166"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

LitCovid-PD-CLO

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T297","span":{"begin":114,"end":119},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T298","span":{"begin":114,"end":119},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T299","span":{"begin":185,"end":193},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T300","span":{"begin":229,"end":239},"obj":"http://purl.obolibrary.org/obo/CL_0000234"},{"id":"T301","span":{"begin":240,"end":248},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T302","span":{"begin":261,"end":267},"obj":"http://purl.obolibrary.org/obo/UBERON_0003103"},{"id":"T303","span":{"begin":290,"end":294},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T304","span":{"begin":311,"end":320},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T305","span":{"begin":355,"end":357},"obj":"http://purl.obolibrary.org/obo/CLO_0050510"},{"id":"T306","span":{"begin":452,"end":461},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T307","span":{"begin":494,"end":498},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"T308","span":{"begin":494,"end":498},"obj":"http://www.ebi.ac.uk/efo/EFO_0000934"},{"id":"T309","span":{"begin":499,"end":511},"obj":"http://purl.obolibrary.org/obo/UBERON_0005169"},{"id":"T310","span":{"begin":513,"end":519},"obj":"http://purl.obolibrary.org/obo/UBERON_0001969"},{"id":"T311","span":{"begin":520,"end":528},"obj":"http://purl.obolibrary.org/obo/UBERON_0000158"},{"id":"T312","span":{"begin":598,"end":607},"obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"T313","span":{"begin":637,"end":647},"obj":"http://purl.obolibrary.org/obo/CL_0000234"},{"id":"T314","span":{"begin":684,"end":689},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T315","span":{"begin":754,"end":763},"obj":"http://purl.obolibrary.org/obo/SO_0000418"},{"id":"T316","span":{"begin":974,"end":976},"obj":"http://purl.obolibrary.org/obo/CLO_0001407"},{"id":"T317","span":{"begin":985,"end":987},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T318","span":{"begin":998,"end":1000},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"},{"id":"T319","span":{"begin":1016,"end":1038},"obj":"http://purl.obolibrary.org/obo/CL_0000113"},{"id":"T320","span":{"begin":1053,"end":1059},"obj":"http://purl.obolibrary.org/obo/UBERON_0001969"},{"id":"T321","span":{"begin":1146,"end":1151},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

LitCovid-PD-CHEBI

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T85","span":{"begin":728,"end":731},"obj":"Chemical"},{"id":"T86","span":{"begin":842,"end":851},"obj":"Chemical"},{"id":"T87","span":{"begin":961,"end":963},"obj":"Chemical"},{"id":"T89","span":{"begin":979,"end":981},"obj":"Chemical"},{"id":"T91","span":{"begin":1103,"end":1112},"obj":"Chemical"}],"attributes":[{"id":"A85","pred":"chebi_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/CHEBI_16991"},{"id":"A86","pred":"chebi_id","subj":"T86","obj":"http://purl.obolibrary.org/obo/CHEBI_22587"},{"id":"A87","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A88","pred":"chebi_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A89","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A90","pred":"chebi_id","subj":"T89","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A91","pred":"chebi_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/CHEBI_25367"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

LitCovid-PD-GO-BP

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T84","span":{"begin":584,"end":596},"obj":"http://purl.obolibrary.org/obo/GO_0006954"},{"id":"T85","span":{"begin":754,"end":772},"obj":"http://purl.obolibrary.org/obo/GO_0007165"},{"id":"T86","span":{"begin":754,"end":763},"obj":"http://purl.obolibrary.org/obo/GO_0023052"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T122","span":{"begin":0,"end":105},"obj":"Sentence"},{"id":"T123","span":{"begin":106,"end":273},"obj":"Sentence"},{"id":"T124","span":{"begin":274,"end":512},"obj":"Sentence"},{"id":"T125","span":{"begin":513,"end":701},"obj":"Sentence"},{"id":"T126","span":{"begin":702,"end":830},"obj":"Sentence"},{"id":"T127","span":{"begin":831,"end":1002},"obj":"Sentence"},{"id":"T128","span":{"begin":1003,"end":1201},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

2_test

{"project":"2_test","denotations":[{"id":"32861199-32145185-26409847","span":{"begin":99,"end":100},"obj":"32145185"},{"id":"32861199-31883097-26409848","span":{"begin":101,"end":103},"obj":"31883097"},{"id":"32861199-32651212-26409849","span":{"begin":953,"end":955},"obj":"32651212"},{"id":"32861199-32278362-26409850","span":{"begin":998,"end":1000},"obj":"32278362"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

LitCovid-PMC-OGER-BB

LitCovid-PubTator

{"project":"LitCovid-PubTator","denotations":[{"id":"501","span":{"begin":25,"end":29},"obj":"Disease"},{"id":"502","span":{"begin":63,"end":67},"obj":"Disease"},{"id":"503","span":{"begin":143,"end":151},"obj":"Disease"},{"id":"504","span":{"begin":252,"end":260},"obj":"Disease"},{"id":"505","span":{"begin":390,"end":402},"obj":"Disease"},{"id":"506","span":{"begin":584,"end":596},"obj":"Disease"},{"id":"507","span":{"begin":675,"end":683},"obj":"Disease"}],"attributes":[{"id":"A501","pred":"tao:has_database_id","subj":"501","obj":"MESH:D018352"},{"id":"A502","pred":"tao:has_database_id","subj":"502","obj":"MESH:D012128"},{"id":"A503","pred":"tao:has_database_id","subj":"503","obj":"MESH:C000657245"},{"id":"A504","pred":"tao:has_database_id","subj":"504","obj":"MESH:D007239"},{"id":"A505","pred":"tao:has_database_id","subj":"505","obj":"MESH:C563551"},{"id":"A506","pred":"tao:has_database_id","subj":"506","obj":"MESH:D007249"},{"id":"A507","pred":"tao:has_database_id","subj":"507","obj":"MESH:D009336"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

MyTest

{"project":"MyTest","denotations":[{"id":"32861199-32145185-26409847","span":{"begin":99,"end":100},"obj":"32145185"},{"id":"32861199-31883097-26409848","span":{"begin":101,"end":103},"obj":"31883097"},{"id":"32861199-32651212-26409849","span":{"begin":953,"end":955},"obj":"32651212"},{"id":"32861199-32278362-26409850","span":{"begin":998,"end":1000},"obj":"32278362"}],"namespaces":[{"prefix":"_base","uri":"https://www.uniprot.org/uniprot/testbase"},{"prefix":"UniProtKB","uri":"https://www.uniprot.org/uniprot/"},{"prefix":"uniprot","uri":"https://www.uniprot.org/uniprotkb/"}],"text":"Earlier studies on SARS1/MERS revealed many of the features of ARDS and of macrophage involvement [6,51]. Initial blood and tissue analysis of COVID-19 provided morphologic evidence of monocyte abnormality and intense macrophage phagocytic activity in infected organs [65]. FACS and single cell RNA analysis of monocytes and broncho-alveolar macrophages [18] provided evidence of emergency myelopoiesis [64] and confirmed the presence of recruited and activated macrophages in alveoli [17] and lung interstitium. Plasma membrane opsonic and other receptors contribute to dysregulated inflammation, monocytic hyperactivation and impaired phagocytic clearance of apoptotic and necrotic cells and debris. Acting through NFkB, RNA, DNA and other sensing and signaling pathways, they initiate production of numerous secretory products. Particular antiviral and proinflammatory products have been targeted for anti-inflammatory treatment, including the IFNs [55,56], IL-1 family [52], IL-6 [27] and TNF [22]. In addition, mononuclear phagocytes interact with plasma cascades, and through upregulated adhesion molecules, with other myeloid and lymphoid cells, platelets, system-wide endothelia and epithelia."}

PMC:7456455 / 20564-21765 JSONTXT

Annnotations TAB JSON ListView MergeView

PMC:7456455 / 20564-21765 JSON TXT