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PMC:7445716 / 51910-52742 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T352 29-34 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T353 43-48 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T354 113-118 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T355 289-291 Body_part denotes H3 http://purl.org/sig/ont/fma/fma84131
T356 523-527 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T357 558-565 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T358 599-604 Body_part denotes Brain http://purl.org/sig/ont/fma/fma50801
T359 658-670 Body_part denotes cauda equina http://purl.org/sig/ont/fma/fma52590
T360 671-682 Body_part denotes nerve roots http://purl.org/sig/ont/fma/fma5981
T361 671-676 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T152 29-34 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T153 43-48 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T154 113-118 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T155 599-604 Body_part denotes Brain http://purl.obolibrary.org/obo/UBERON_0000955
T156 658-670 Body_part denotes cauda equina http://purl.obolibrary.org/obo/UBERON_0012337
T157 671-682 Body_part denotes nerve roots http://purl.obolibrary.org/obo/UBERON_0002211
T158 671-676 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T520 231-240 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T521 258-267 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T522 594-598 Disease denotes AIDP http://purl.obolibrary.org/obo/MONDO_0020347

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T382 16-18 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T383 29-34 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T384 43-48 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T385 70-73 http://purl.obolibrary.org/obo/CLO_0001311 denotes 356
T386 241-242 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T387 247-248 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T388 249-256 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T389 268-269 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T390 270-275 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T391 297-299 http://purl.obolibrary.org/obo/CLO_0003607 denotes H5
T392 359-364 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T393 409-414 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T394 421-422 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T395 427-428 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T396 523-527 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T397 599-604 http://purl.obolibrary.org/obo/UBERON_0000955 denotes Brain
T398 599-604 http://www.ebi.ac.uk/efo/EFO_0000302 denotes Brain
T399 671-676 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T20 67-69 Chemical denotes PC http://purl.obolibrary.org/obo/CHEBI_16110|http://purl.obolibrary.org/obo/CHEBI_49183|http://purl.obolibrary.org/obo/CHEBI_53201|http://purl.obolibrary.org/obo/CHEBI_55395|http://purl.obolibrary.org/obo/CHEBI_57643|http://purl.obolibrary.org/obo/CHEBI_61433
T70849 558-565 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T44331 704-715 Chemical denotes Paracetamol http://purl.obolibrary.org/obo/CHEBI_46195
T71546 717-729 Chemical denotes azithromycin http://purl.obolibrary.org/obo/CHEBI_2955
T15918 731-749 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
670 80-83 Gene denotes CR Gene:1401
754 257-274 Species denotes influenza A viru Tax:11320
755 317-321 Species denotes H5N Tax:102793
756 386-413 Species denotes respiratory syncytial viru Tax:12814
757 426-439 Species denotes B; adenoviru Tax:740971
758 458-468 Species denotes rhinoviru Tax:12059
759 483-499 Species denotes Coronavirus 229 Tax:11137
797 229-239 Species denotes   influenz Tax:11320
805 501-505 Species denotes HKU Tax:290028
806 507-511 Species denotes NL6 Tax:277944
807 517-521 Species denotes OC4 Tax:31631
912 579-603 Disease denotes Demyelinating AIDP Brai MESH:D001927

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T286 0-534 Sentence denotes Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count:
T287 535-593 Sentence denotes 5 mm3, increased total protein (316.7 mg/dL) Demyelinating
T288 594-630 Sentence denotes AIDP Brain: no pathological findings
T289 631-832 Sentence denotes Spinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T680 160-176 Phenotype denotes elevated d-Dimer http://purl.obolibrary.org/obo/HP_0033106
T681 580-593 Phenotype denotes Demyelinating http://purl.obolibrary.org/obo/HP_0011096

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T613 29-34 UBERON:0001443 denotes chest
T614 43-48 UBERON:0001443 denotes chest
T615 113-118 UBERON:0001977 denotes serum
T616 249-256 NCBITaxon:10239 denotes viruses
T617 258-267 NCBITaxon:7719 denotes influenza
T618 270-275 NCBITaxon:10239 denotes virus
T619 345-358 NCBITaxon:7656 denotes parainfluenza
T620 359-364 NCBITaxon:10239 denotes virus
T621 387-398 UBERON:0001004;NCBITaxon:12814 denotes respiratory
T622 399-408 NCBITaxon:12814 denotes syncytial
T623 409-414 NCBITaxon:10239 denotes virus
T624 430-440 NCBITaxon:10508 denotes adenovirus
T625 442-457 NCBITaxon:33208 denotes metapneumovirus
T626 459-469 NCBITaxon:11632 denotes rhinovirus
T627 471-482 NCBITaxon:9255 denotes enterovirus
T628 484-495 NCBITaxon:11118 denotes Coronavirus
T629 658-663 UBERON:0012337 denotes cauda
T630 664-670 UBERON:0012337;NCBITaxon:7586 denotes equina
T631 671-676 UBERON:0001021 denotes nerve
T632 704-715 CHEBI:46195;CHEBI:46195 denotes Paracetamol
T633 717-729 CHEBI:2955;CHEBI:2955;DG_6 denotes azithromycin
T634 731-759 CHEBI:24751;CHEBI:24751 denotes hydroxychloroquine Discharge

2_test

Id Subject Object Predicate Lexical cue
32840686-32652520-63205772 15-17 32652520 denotes [2