PMC:7445716 / 51910-52742 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T352","span":{"begin":29,"end":34},"obj":"Body_part"},{"id":"T353","span":{"begin":43,"end":48},"obj":"Body_part"},{"id":"T354","span":{"begin":113,"end":118},"obj":"Body_part"},{"id":"T355","span":{"begin":289,"end":291},"obj":"Body_part"},{"id":"T356","span":{"begin":523,"end":527},"obj":"Body_part"},{"id":"T357","span":{"begin":558,"end":565},"obj":"Body_part"},{"id":"T358","span":{"begin":599,"end":604},"obj":"Body_part"},{"id":"T359","span":{"begin":658,"end":670},"obj":"Body_part"},{"id":"T360","span":{"begin":671,"end":682},"obj":"Body_part"},{"id":"T361","span":{"begin":671,"end":676},"obj":"Body_part"}],"attributes":[{"id":"A352","pred":"fma_id","subj":"T352","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A353","pred":"fma_id","subj":"T353","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A354","pred":"fma_id","subj":"T354","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A355","pred":"fma_id","subj":"T355","obj":"http://purl.org/sig/ont/fma/fma84131"},{"id":"A356","pred":"fma_id","subj":"T356","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A357","pred":"fma_id","subj":"T357","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A358","pred":"fma_id","subj":"T358","obj":"http://purl.org/sig/ont/fma/fma50801"},{"id":"A359","pred":"fma_id","subj":"T359","obj":"http://purl.org/sig/ont/fma/fma52590"},{"id":"A360","pred":"fma_id","subj":"T360","obj":"http://purl.org/sig/ont/fma/fma5981"},{"id":"A361","pred":"fma_id","subj":"T361","obj":"http://purl.org/sig/ont/fma/fma65132"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T152","span":{"begin":29,"end":34},"obj":"Body_part"},{"id":"T153","span":{"begin":43,"end":48},"obj":"Body_part"},{"id":"T154","span":{"begin":113,"end":118},"obj":"Body_part"},{"id":"T155","span":{"begin":599,"end":604},"obj":"Body_part"},{"id":"T156","span":{"begin":658,"end":670},"obj":"Body_part"},{"id":"T157","span":{"begin":671,"end":682},"obj":"Body_part"},{"id":"T158","span":{"begin":671,"end":676},"obj":"Body_part"}],"attributes":[{"id":"A152","pred":"uberon_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A153","pred":"uberon_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A154","pred":"uberon_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A155","pred":"uberon_id","subj":"T155","obj":"http://purl.obolibrary.org/obo/UBERON_0000955"},{"id":"A156","pred":"uberon_id","subj":"T156","obj":"http://purl.obolibrary.org/obo/UBERON_0012337"},{"id":"A157","pred":"uberon_id","subj":"T157","obj":"http://purl.obolibrary.org/obo/UBERON_0002211"},{"id":"A158","pred":"uberon_id","subj":"T158","obj":"http://purl.obolibrary.org/obo/UBERON_0001021"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T520","span":{"begin":231,"end":240},"obj":"Disease"},{"id":"T521","span":{"begin":258,"end":267},"obj":"Disease"},{"id":"T522","span":{"begin":594,"end":598},"obj":"Disease"}],"attributes":[{"id":"A520","pred":"mondo_id","subj":"T520","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A521","pred":"mondo_id","subj":"T521","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A522","pred":"mondo_id","subj":"T522","obj":"http://purl.obolibrary.org/obo/MONDO_0020347"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T382","span":{"begin":16,"end":18},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T383","span":{"begin":29,"end":34},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T384","span":{"begin":43,"end":48},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T385","span":{"begin":70,"end":73},"obj":"http://purl.obolibrary.org/obo/CLO_0001311"},{"id":"T386","span":{"begin":241,"end":242},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T387","span":{"begin":247,"end":248},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T388","span":{"begin":249,"end":256},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T389","span":{"begin":268,"end":269},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T390","span":{"begin":270,"end":275},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T391","span":{"begin":297,"end":299},"obj":"http://purl.obolibrary.org/obo/CLO_0003607"},{"id":"T392","span":{"begin":359,"end":364},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T393","span":{"begin":409,"end":414},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T394","span":{"begin":421,"end":422},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T395","span":{"begin":427,"end":428},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T396","span":{"begin":523,"end":527},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T397","span":{"begin":599,"end":604},"obj":"http://purl.obolibrary.org/obo/UBERON_0000955"},{"id":"T398","span":{"begin":599,"end":604},"obj":"http://www.ebi.ac.uk/efo/EFO_0000302"},{"id":"T399","span":{"begin":671,"end":676},"obj":"http://purl.obolibrary.org/obo/UBERON_0001021"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T20","span":{"begin":67,"end":69},"obj":"Chemical"},{"id":"T70849","span":{"begin":558,"end":565},"obj":"Chemical"},{"id":"T44331","span":{"begin":704,"end":715},"obj":"Chemical"},{"id":"T71546","span":{"begin":717,"end":729},"obj":"Chemical"},{"id":"T15918","span":{"begin":731,"end":749},"obj":"Chemical"}],"attributes":[{"id":"A61482","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_16110"},{"id":"A40448","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_49183"},{"id":"A97415","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_53201"},{"id":"A65526","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_55395"},{"id":"A9406","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_57643"},{"id":"A14900","pred":"chebi_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/CHEBI_61433"},{"id":"A13376","pred":"chebi_id","subj":"T70849","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A41438","pred":"chebi_id","subj":"T44331","obj":"http://purl.obolibrary.org/obo/CHEBI_46195"},{"id":"A53257","pred":"chebi_id","subj":"T71546","obj":"http://purl.obolibrary.org/obo/CHEBI_2955"},{"id":"A66756","pred":"chebi_id","subj":"T15918","obj":"http://purl.obolibrary.org/obo/CHEBI_5801"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"LitCovid-PubTator","denotations":[{"id":"670","span":{"begin":80,"end":83},"obj":"Gene"},{"id":"754","span":{"begin":257,"end":274},"obj":"Species"},{"id":"755","span":{"begin":317,"end":321},"obj":"Species"},{"id":"756","span":{"begin":386,"end":413},"obj":"Species"},{"id":"757","span":{"begin":426,"end":439},"obj":"Species"},{"id":"758","span":{"begin":458,"end":468},"obj":"Species"},{"id":"759","span":{"begin":483,"end":499},"obj":"Species"},{"id":"797","span":{"begin":229,"end":239},"obj":"Species"},{"id":"805","span":{"begin":501,"end":505},"obj":"Species"},{"id":"806","span":{"begin":507,"end":511},"obj":"Species"},{"id":"807","span":{"begin":517,"end":521},"obj":"Species"},{"id":"912","span":{"begin":579,"end":603},"obj":"Disease"}],"attributes":[{"id":"A670","pred":"tao:has_database_id","subj":"670","obj":"Gene:1401"},{"id":"A754","pred":"tao:has_database_id","subj":"754","obj":"Tax:11320"},{"id":"A755","pred":"tao:has_database_id","subj":"755","obj":"Tax:102793"},{"id":"A756","pred":"tao:has_database_id","subj":"756","obj":"Tax:12814"},{"id":"A757","pred":"tao:has_database_id","subj":"757","obj":"Tax:740971"},{"id":"A758","pred":"tao:has_database_id","subj":"758","obj":"Tax:12059"},{"id":"A759","pred":"tao:has_database_id","subj":"759","obj":"Tax:11137"},{"id":"A797","pred":"tao:has_database_id","subj":"797","obj":"Tax:11320"},{"id":"A805","pred":"tao:has_database_id","subj":"805","obj":"Tax:290028"},{"id":"A806","pred":"tao:has_database_id","subj":"806","obj":"Tax:277944"},{"id":"A807","pred":"tao:has_database_id","subj":"807","obj":"Tax:31631"},{"id":"A912","pred":"tao:has_database_id","subj":"912","obj":"MESH:D001927"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"LitCovid-sentences","denotations":[{"id":"T286","span":{"begin":0,"end":534},"obj":"Sentence"},{"id":"T287","span":{"begin":535,"end":593},"obj":"Sentence"},{"id":"T288","span":{"begin":594,"end":630},"obj":"Sentence"},{"id":"T289","span":{"begin":631,"end":832},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T680","span":{"begin":160,"end":176},"obj":"Phenotype"},{"id":"T681","span":{"begin":580,"end":593},"obj":"Phenotype"}],"attributes":[{"id":"A680","pred":"hp_id","subj":"T680","obj":"http://purl.obolibrary.org/obo/HP_0033106"},{"id":"A681","pred":"hp_id","subj":"T681","obj":"http://purl.obolibrary.org/obo/HP_0011096"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T613","span":{"begin":29,"end":34},"obj":"UBERON:0001443"},{"id":"T614","span":{"begin":43,"end":48},"obj":"UBERON:0001443"},{"id":"T615","span":{"begin":113,"end":118},"obj":"UBERON:0001977"},{"id":"T616","span":{"begin":249,"end":256},"obj":"NCBITaxon:10239"},{"id":"T617","span":{"begin":258,"end":267},"obj":"NCBITaxon:7719"},{"id":"T618","span":{"begin":270,"end":275},"obj":"NCBITaxon:10239"},{"id":"T619","span":{"begin":345,"end":358},"obj":"NCBITaxon:7656"},{"id":"T620","span":{"begin":359,"end":364},"obj":"NCBITaxon:10239"},{"id":"T621","span":{"begin":387,"end":398},"obj":"UBERON:0001004;NCBITaxon:12814"},{"id":"T622","span":{"begin":399,"end":408},"obj":"NCBITaxon:12814"},{"id":"T623","span":{"begin":409,"end":414},"obj":"NCBITaxon:10239"},{"id":"T624","span":{"begin":430,"end":440},"obj":"NCBITaxon:10508"},{"id":"T625","span":{"begin":442,"end":457},"obj":"NCBITaxon:33208"},{"id":"T626","span":{"begin":459,"end":469},"obj":"NCBITaxon:11632"},{"id":"T627","span":{"begin":471,"end":482},"obj":"NCBITaxon:9255"},{"id":"T628","span":{"begin":484,"end":495},"obj":"NCBITaxon:11118"},{"id":"T629","span":{"begin":658,"end":663},"obj":"UBERON:0012337"},{"id":"T630","span":{"begin":664,"end":670},"obj":"UBERON:0012337;NCBITaxon:7586"},{"id":"T631","span":{"begin":671,"end":676},"obj":"UBERON:0001021"},{"id":"T632","span":{"begin":704,"end":715},"obj":"CHEBI:46195;CHEBI:46195"},{"id":"T633","span":{"begin":717,"end":729},"obj":"CHEBI:2955;CHEBI:2955;DG_6"},{"id":"T634","span":{"begin":731,"end":759},"obj":"CHEBI:24751;CHEBI:24751"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}

{"project":"2_test","denotations":[{"id":"32840686-32652520-63205772","span":{"begin":15,"end":17},"obj":"32652520"}],"text":"Khalifa et al. [27] RT-PCR + chest X-ray + chest CT WBC 5.5 × 103, PC 356 × 103, CRP 0.5 mg/dL (normal 0.0–0.5), serum ferritin 87.3 ng/ml (normal 12.0–150.0), elevated d-Dimer levels 0.72 mg/L (0.00–0.49) Negative screening for:  influenza A and B viruses; influenza A virus subtypes H1, H3, and H5 including subtype H5N1 of the Asian lineage; parainfluenza virus types 1, 2, 3, and 4; respiratory syncytial virus types A and B; adenovirus; metapneumovirus; rhinovirus; enterovirus; Coronavirus 229E, HKU1, NL63, and OC43 Cell count: 5 mm3, increased total protein (316.7 mg/dL) Demyelinating\nAIDP Brain: no pathological findings\nSpinal: enhancement of the cauda equina nerve roots IVIG 1 g/kg (2 days) Paracetamol, azithromycin, hydroxychloroquine Discharge to home after 15 days with clinical and electrophysiological improvement"}