PMC:7443692 / 70578-71350 JSONTXT

{"target":"http://pubannotation.org/docs/sourcedb/PMC/sourceid/7443692","sourcedb":"PMC","sourceid":"7443692","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7443692","text":"Raw glycoproteomic data from the mass spectrometers was searched using Proteome Discoverer v1.4 (SEQUEST), Protein Metrics Inc. Byonic v3.8.13, and pGlyco v2.2.2. For data searches using Proteome Discoverer, the results were processed to apply false discovery rate filtering using ProteoIQ v2.7. For the deglycosylated protein work, search results from SEQUEST were filtered in ProteoIQ with a 1% false discovery rate at the protein level and 10% at the peptide level. For N-linked glycopeptide analysis, pGlyco was used with false discovery rate of 1% at the glycan level and 10% at the peptide level. For disulfide bond analysis and O-glycopeptide searches, Byonic was used and the false discovery rate was set to 1%. 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