PMC:7443692 / 70578-71350
Annnotations
LitCovid-sample-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T455 | 107-114 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T456 | 319-326 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T457 | 425-432 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T458 | 454-461 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
| T459 | 482-494 | Chemical | denotes | glycopeptide | http://purl.obolibrary.org/obo/CHEBI_24396 |
| T460 | 588-595 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
| T461 | 607-616 | Chemical | denotes | disulfide | http://purl.obolibrary.org/obo/CHEBI_48343 |
| T462 | 637-649 | Chemical | denotes | glycopeptide | http://purl.obolibrary.org/obo/CHEBI_24396 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T470 | 0-127 | Sentence | denotes | Raw glycoproteomic data from the mass spectrometers was searched using Proteome Discoverer v1.4 (SEQUEST), Protein Metrics Inc. |
| T471 | 128-162 | Sentence | denotes | Byonic v3.8.13, and pGlyco v2.2.2. |
| T472 | 163-295 | Sentence | denotes | For data searches using Proteome Discoverer, the results were processed to apply false discovery rate filtering using ProteoIQ v2.7. |
| T473 | 296-468 | Sentence | denotes | For the deglycosylated protein work, search results from SEQUEST were filtered in ProteoIQ with a 1% false discovery rate at the protein level and 10% at the peptide level. |
| T474 | 469-602 | Sentence | denotes | For N-linked glycopeptide analysis, pGlyco was used with false discovery rate of 1% at the glycan level and 10% at the peptide level. |
| T475 | 603-719 | Sentence | denotes | For disulfide bond analysis and O-glycopeptide searches, Byonic was used and the false discovery rate was set to 1%. |
| T476 | 720-772 | Sentence | denotes | All mass spectrometry results were manually curated. |
LitCovid-sample-PD-FMA
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T246 | 107-114 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T247 | 319-326 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T248 | 425-432 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T249 | 482-494 | Body_part | denotes | glycopeptide | http://purl.org/sig/ont/fma/fma82784 |
| T250 | 637-649 | Body_part | denotes | glycopeptide | http://purl.org/sig/ont/fma/fma82784 |
LitCovid-sample-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T137 | 244-249 | http://purl.obolibrary.org/obo/GO_0071878 | denotes | false |
| T138 | 244-249 | http://purl.obolibrary.org/obo/GO_0071877 | denotes | false |
| T139 | 397-402 | http://purl.obolibrary.org/obo/GO_0071878 | denotes | false |
| T140 | 397-402 | http://purl.obolibrary.org/obo/GO_0071877 | denotes | false |
| T141 | 526-531 | http://purl.obolibrary.org/obo/GO_0071878 | denotes | false |
| T142 | 526-531 | http://purl.obolibrary.org/obo/GO_0071877 | denotes | false |
| T143 | 684-689 | http://purl.obolibrary.org/obo/GO_0071878 | denotes | false |
| T144 | 684-689 | http://purl.obolibrary.org/obo/GO_0071877 | denotes | false |
LitCovid-sample-Glycan
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2948 | 720-723 | https://glytoucan.org/Structures/Glycans/G05518TD | denotes | All |