PMC:7443692 / 44749-47526 JSON TXT

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LitCovid-sample-CHEBI

LitCovid-sample-PD-NCBITaxon

LitCovid-sample-sentences

LitCovid-sample-PD-MONDO

{"project":"LitCovid-sample-PD-MONDO","denotations":[{"id":"T78","span":{"begin":84,"end":94},"obj":"Disease"},{"id":"T79","span":{"begin":903,"end":913},"obj":"Disease"},{"id":"T80","span":{"begin":1005,"end":1015},"obj":"Disease"},{"id":"T81","span":{"begin":1108,"end":1118},"obj":"Disease"},{"id":"T82","span":{"begin":1197,"end":1207},"obj":"Disease"}],"attributes":[{"id":"A78","pred":"mondo_id","subj":"T78","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A79","pred":"mondo_id","subj":"T79","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A80","pred":"mondo_id","subj":"T80","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A81","pred":"mondo_id","subj":"T81","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A82","pred":"mondo_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"REAGENT or RESOURCE SOURCE IDENTIFIER\nChemicals, Peptides, and Recombinant Proteins\nSARS-CoV-2 S protein This Study N/A\nHuman ACE2 protein This Study N/A\n2x Laemmli sample buffer Bio-Rad Cat#161-0737\nInvitrogen NuPAGE 4 to 12%, Bis-Tris, Mini Protein Gel Thermo Fisher Scientific Cat#NP0321PK2\nCoomassie Brilliant Blue G-250 Dye Thermo Fisher Scientific Cat#20279\nDithiothreitol Sigma Aldrich Cat#43815\nIodoacetamide Sigma Aldrich Cat#I1149\nTrypsin Promega Cat#V5111\nLys-C Promega Cat#V1671\nArg-C Promega Cat#V1881\nGlu-C Promega Cat#V1651\nAsp-N Promega Cat#VA1160\nEndoglycosidase H Promega Cat#V4871\nPNGaseF Promega Cat#V4831\nChymotrypsin Athens Research and Technology Cat#16-19-030820\nAlpha lytic protease New England BioLabs Cat#P8113\n18O water Cambridge Isotope Laboratories OLM-782-10-1\nO-protease OpeRATOR Genovis Cat#G1-OP1-020\nDeposited Data\nMS data for site-specific N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019937\nMS data for site-specific O-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019940\nMS data for deglycosylated N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019938\nMS data for disulfide bond analysis for SARS-Cov-2 S This Study PXD019939\nMS data for N-linked glycomics deposited at GlycoPost This Study GPST000120\nMS data for O-linked glycomics deposited at GlycoPost This Study GPST000121\nExperimental Models: Cell Lines\n293-F Cells GIBCO Cat#R79007\nVero-6 Cells ATCC CRL1586\nExperimental Models: Organisms/Strains\nVSV(G)-Pseudoviruses This Study N/A\nSoftware and Algorithms\npGlyco v2.2.2 Liu et al., 2017 http://pfind.ict.ac.cn/software/pGlyco/index.html\nProteome Discoverer v1.4 Thermo Fisher Scientific CAT#OPTON-30945\nByonic v3.8.13 Protein Metrics Inc. https://www.proteinmetrics.com/products/byonic/\nProteoIQ v2.7 Premier Biosoft (Bern et al., 2012) http://www.premierbiosoft.com/protein_quantification_software/index.html\nGRITS Toolbox V1.1 Weatherly et al., 2019 http://www.grits-toolbox.org/\nEMBOSS needle v6.6.0 Rice et al., 2000 https://www.ebi.ac.uk/Tools/psa/emboss_needle/\nBiopython v1.76 Cock et al., 2009 https://biopython.org/\nRpdb v2.3 Julien Ide https://rdrr.io/cran/Rpdb/\nSignalP V5.0 Almagro Armenteros et al., 2019 http://www.cbs.dtu.dk/services/SignalP/\nLibreOFFICE Writer v6.4.4.2 The Document Foundation https://www.libreoffice.org/download/download/\nGlyGen V1.5 York et al., 2020 https://www.glygen.org\nGNOme V1.5.5 OBO Foundry https://github.com/glygen-glycan-data/GNOme/blob/master/README.md\nGlyTouCan V3.1.0 Aoki-Kinoshita et al., 2016 https://glytoucan.org\nInkscape V1.0 Inkscape project contributors https://inkscape.org/release/inkscape-1.0/\nffmpeg V3.4 The FFmpeg developers https://ffmpeg.org/\nCygwin V3.1.5 Cygwin developers https://www.cygwin.com/"}

LitCovid-sample-UniProt

LitCovid-sample-PD-IDO

{"project":"LitCovid-sample-PD-IDO","denotations":[{"id":"T139","span":{"begin":862,"end":866},"obj":"http://purl.obolibrary.org/obo/BFO_0000029"},{"id":"T140","span":{"begin":964,"end":968},"obj":"http://purl.obolibrary.org/obo/BFO_0000029"},{"id":"T141","span":{"begin":1404,"end":1408},"obj":"http://purl.obolibrary.org/obo/CL_0000000"},{"id":"T142","span":{"begin":1421,"end":1426},"obj":"http://purl.obolibrary.org/obo/CL_0000000"},{"id":"T143","span":{"begin":1451,"end":1456},"obj":"http://purl.obolibrary.org/obo/CL_0000000"},{"id":"T144","span":{"begin":1491,"end":1500},"obj":"http://purl.obolibrary.org/obo/OBI_0100026"},{"id":"T145","span":{"begin":1783,"end":1791},"obj":"http://purl.obolibrary.org/obo/IDO_0000607"}],"text":"REAGENT or RESOURCE SOURCE IDENTIFIER\nChemicals, Peptides, and Recombinant Proteins\nSARS-CoV-2 S protein This Study N/A\nHuman ACE2 protein This Study N/A\n2x Laemmli sample buffer Bio-Rad Cat#161-0737\nInvitrogen NuPAGE 4 to 12%, Bis-Tris, Mini Protein Gel Thermo Fisher Scientific Cat#NP0321PK2\nCoomassie Brilliant Blue G-250 Dye Thermo Fisher Scientific Cat#20279\nDithiothreitol Sigma Aldrich Cat#43815\nIodoacetamide Sigma Aldrich Cat#I1149\nTrypsin Promega Cat#V5111\nLys-C Promega Cat#V1671\nArg-C Promega Cat#V1881\nGlu-C Promega Cat#V1651\nAsp-N Promega Cat#VA1160\nEndoglycosidase H Promega Cat#V4871\nPNGaseF Promega Cat#V4831\nChymotrypsin Athens Research and Technology Cat#16-19-030820\nAlpha lytic protease New England BioLabs Cat#P8113\n18O water Cambridge Isotope Laboratories OLM-782-10-1\nO-protease OpeRATOR Genovis Cat#G1-OP1-020\nDeposited Data\nMS data for site-specific N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019937\nMS data for site-specific O-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019940\nMS data for deglycosylated N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019938\nMS data for disulfide bond analysis for SARS-Cov-2 S This Study PXD019939\nMS data for N-linked glycomics deposited at GlycoPost This Study GPST000120\nMS data for O-linked glycomics deposited at GlycoPost This Study GPST000121\nExperimental Models: Cell Lines\n293-F Cells GIBCO Cat#R79007\nVero-6 Cells ATCC CRL1586\nExperimental Models: Organisms/Strains\nVSV(G)-Pseudoviruses This Study N/A\nSoftware and Algorithms\npGlyco v2.2.2 Liu et al., 2017 http://pfind.ict.ac.cn/software/pGlyco/index.html\nProteome Discoverer v1.4 Thermo Fisher Scientific CAT#OPTON-30945\nByonic v3.8.13 Protein Metrics Inc. https://www.proteinmetrics.com/products/byonic/\nProteoIQ v2.7 Premier Biosoft (Bern et al., 2012) http://www.premierbiosoft.com/protein_quantification_software/index.html\nGRITS Toolbox V1.1 Weatherly et al., 2019 http://www.grits-toolbox.org/\nEMBOSS needle v6.6.0 Rice et al., 2000 https://www.ebi.ac.uk/Tools/psa/emboss_needle/\nBiopython v1.76 Cock et al., 2009 https://biopython.org/\nRpdb v2.3 Julien Ide https://rdrr.io/cran/Rpdb/\nSignalP V5.0 Almagro Armenteros et al., 2019 http://www.cbs.dtu.dk/services/SignalP/\nLibreOFFICE Writer v6.4.4.2 The Document Foundation https://www.libreoffice.org/download/download/\nGlyGen V1.5 York et al., 2020 https://www.glygen.org\nGNOme V1.5.5 OBO Foundry https://github.com/glygen-glycan-data/GNOme/blob/master/README.md\nGlyTouCan V3.1.0 Aoki-Kinoshita et al., 2016 https://glytoucan.org\nInkscape V1.0 Inkscape project contributors https://inkscape.org/release/inkscape-1.0/\nffmpeg V3.4 The FFmpeg developers https://ffmpeg.org/\nCygwin V3.1.5 Cygwin developers https://www.cygwin.com/"}

LitCovid-sample-PD-FMA

LitCovid-sample-PD-GO-BP-0

{"project":"LitCovid-sample-PD-GO-BP-0","denotations":[{"id":"T108","span":{"begin":491,"end":496},"obj":"http://purl.obolibrary.org/obo/GO_0043870"},{"id":"T109","span":{"begin":600,"end":607},"obj":"http://purl.obolibrary.org/obo/GO_0000224"},{"id":"T110","span":{"begin":1700,"end":1703},"obj":"http://purl.obolibrary.org/obo/GO_0004096"}],"text":"REAGENT or RESOURCE SOURCE IDENTIFIER\nChemicals, Peptides, and Recombinant Proteins\nSARS-CoV-2 S protein This Study N/A\nHuman ACE2 protein This Study N/A\n2x Laemmli sample buffer Bio-Rad Cat#161-0737\nInvitrogen NuPAGE 4 to 12%, Bis-Tris, Mini Protein Gel Thermo Fisher Scientific Cat#NP0321PK2\nCoomassie Brilliant Blue G-250 Dye Thermo Fisher Scientific Cat#20279\nDithiothreitol Sigma Aldrich Cat#43815\nIodoacetamide Sigma Aldrich Cat#I1149\nTrypsin Promega Cat#V5111\nLys-C Promega Cat#V1671\nArg-C Promega Cat#V1881\nGlu-C Promega Cat#V1651\nAsp-N Promega Cat#VA1160\nEndoglycosidase H Promega Cat#V4871\nPNGaseF Promega Cat#V4831\nChymotrypsin Athens Research and Technology Cat#16-19-030820\nAlpha lytic protease New England BioLabs Cat#P8113\n18O water Cambridge Isotope Laboratories OLM-782-10-1\nO-protease OpeRATOR Genovis Cat#G1-OP1-020\nDeposited Data\nMS data for site-specific N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019937\nMS data for site-specific O-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019940\nMS data for deglycosylated N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019938\nMS data for disulfide bond analysis for SARS-Cov-2 S This Study PXD019939\nMS data for N-linked glycomics deposited at GlycoPost This Study GPST000120\nMS data for O-linked glycomics deposited at GlycoPost This Study GPST000121\nExperimental Models: Cell Lines\n293-F Cells GIBCO Cat#R79007\nVero-6 Cells ATCC CRL1586\nExperimental Models: Organisms/Strains\nVSV(G)-Pseudoviruses This Study N/A\nSoftware and Algorithms\npGlyco v2.2.2 Liu et al., 2017 http://pfind.ict.ac.cn/software/pGlyco/index.html\nProteome Discoverer v1.4 Thermo Fisher Scientific CAT#OPTON-30945\nByonic v3.8.13 Protein Metrics Inc. https://www.proteinmetrics.com/products/byonic/\nProteoIQ v2.7 Premier Biosoft (Bern et al., 2012) http://www.premierbiosoft.com/protein_quantification_software/index.html\nGRITS Toolbox V1.1 Weatherly et al., 2019 http://www.grits-toolbox.org/\nEMBOSS needle v6.6.0 Rice et al., 2000 https://www.ebi.ac.uk/Tools/psa/emboss_needle/\nBiopython v1.76 Cock et al., 2009 https://biopython.org/\nRpdb v2.3 Julien Ide https://rdrr.io/cran/Rpdb/\nSignalP V5.0 Almagro Armenteros et al., 2019 http://www.cbs.dtu.dk/services/SignalP/\nLibreOFFICE Writer v6.4.4.2 The Document Foundation https://www.libreoffice.org/download/download/\nGlyGen V1.5 York et al., 2020 https://www.glygen.org\nGNOme V1.5.5 OBO Foundry https://github.com/glygen-glycan-data/GNOme/blob/master/README.md\nGlyTouCan V3.1.0 Aoki-Kinoshita et al., 2016 https://glytoucan.org\nInkscape V1.0 Inkscape project contributors https://inkscape.org/release/inkscape-1.0/\nffmpeg V3.4 The FFmpeg developers https://ffmpeg.org/\nCygwin V3.1.5 Cygwin developers https://www.cygwin.com/"}

2_test

{"project":"2_test","denotations":[{"id":"32841605-28874712-19659543","span":{"begin":1595,"end":1599},"obj":"28874712"},{"id":"32841605-30913289-19659544","span":{"begin":1960,"end":1964},"obj":"30913289"},{"id":"32841605-10827456-19659545","span":{"begin":2029,"end":2033},"obj":"10827456"},{"id":"32841605-19304878-19659546","span":{"begin":2110,"end":2114},"obj":"19304878"},{"id":"32841605-30778233-19659547","span":{"begin":2226,"end":2230},"obj":"30778233"},{"id":"32841605-31616925-19659548","span":{"begin":2395,"end":2399},"obj":"31616925"},{"id":"32841605-26476458-19659549","span":{"begin":2554,"end":2558},"obj":"26476458"}],"text":"REAGENT or RESOURCE SOURCE IDENTIFIER\nChemicals, Peptides, and Recombinant Proteins\nSARS-CoV-2 S protein This Study N/A\nHuman ACE2 protein This Study N/A\n2x Laemmli sample buffer Bio-Rad Cat#161-0737\nInvitrogen NuPAGE 4 to 12%, Bis-Tris, Mini Protein Gel Thermo Fisher Scientific Cat#NP0321PK2\nCoomassie Brilliant Blue G-250 Dye Thermo Fisher Scientific Cat#20279\nDithiothreitol Sigma Aldrich Cat#43815\nIodoacetamide Sigma Aldrich Cat#I1149\nTrypsin Promega Cat#V5111\nLys-C Promega Cat#V1671\nArg-C Promega Cat#V1881\nGlu-C Promega Cat#V1651\nAsp-N Promega Cat#VA1160\nEndoglycosidase H Promega Cat#V4871\nPNGaseF Promega Cat#V4831\nChymotrypsin Athens Research and Technology Cat#16-19-030820\nAlpha lytic protease New England BioLabs Cat#P8113\n18O water Cambridge Isotope Laboratories OLM-782-10-1\nO-protease OpeRATOR Genovis Cat#G1-OP1-020\nDeposited Data\nMS data for site-specific N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019937\nMS data for site-specific O-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019940\nMS data for deglycosylated N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019938\nMS data for disulfide bond analysis for SARS-Cov-2 S This Study PXD019939\nMS data for N-linked glycomics deposited at GlycoPost This Study GPST000120\nMS data for O-linked glycomics deposited at GlycoPost This Study GPST000121\nExperimental Models: Cell Lines\n293-F Cells GIBCO Cat#R79007\nVero-6 Cells ATCC CRL1586\nExperimental Models: Organisms/Strains\nVSV(G)-Pseudoviruses This Study N/A\nSoftware and Algorithms\npGlyco v2.2.2 Liu et al., 2017 http://pfind.ict.ac.cn/software/pGlyco/index.html\nProteome Discoverer v1.4 Thermo Fisher Scientific CAT#OPTON-30945\nByonic v3.8.13 Protein Metrics Inc. https://www.proteinmetrics.com/products/byonic/\nProteoIQ v2.7 Premier Biosoft (Bern et al., 2012) http://www.premierbiosoft.com/protein_quantification_software/index.html\nGRITS Toolbox V1.1 Weatherly et al., 2019 http://www.grits-toolbox.org/\nEMBOSS needle v6.6.0 Rice et al., 2000 https://www.ebi.ac.uk/Tools/psa/emboss_needle/\nBiopython v1.76 Cock et al., 2009 https://biopython.org/\nRpdb v2.3 Julien Ide https://rdrr.io/cran/Rpdb/\nSignalP V5.0 Almagro Armenteros et al., 2019 http://www.cbs.dtu.dk/services/SignalP/\nLibreOFFICE Writer v6.4.4.2 The Document Foundation https://www.libreoffice.org/download/download/\nGlyGen V1.5 York et al., 2020 https://www.glygen.org\nGNOme V1.5.5 OBO Foundry https://github.com/glygen-glycan-data/GNOme/blob/master/README.md\nGlyTouCan V3.1.0 Aoki-Kinoshita et al., 2016 https://glytoucan.org\nInkscape V1.0 Inkscape project contributors https://inkscape.org/release/inkscape-1.0/\nffmpeg V3.4 The FFmpeg developers https://ffmpeg.org/\nCygwin V3.1.5 Cygwin developers https://www.cygwin.com/"}

PMC:7443692 / 44749-47526 JSONTXT

Annnotations TAB JSON ListView MergeView

PMC:7443692 / 44749-47526 JSON TXT