PMC:7443692 / 25580-26946
Annnotations
LitCovid-sample-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T168 | 513-523 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T169 | 1134-1144 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T170 | 1302-1305 | Chemical | denotes | Thr | http://purl.obolibrary.org/obo/CHEBI_16857|http://purl.obolibrary.org/obo/CHEBI_30013 |
LitCovid-sample-PD-NCBITaxon
| Id | Subject | Object | Predicate | Lexical cue | ncbi_taxonomy_id |
|---|---|---|---|---|---|
| T71 | 48-58 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
| T72 | 313-323 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
| T73 | 364-374 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
| T74 | 647-657 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
| T75 | 742-752 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
| T76 | 956-966 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
| T77 | 1199-1209 | Species | denotes | SARS-CoV-2 | NCBItxid:2697049 |
LitCovid-sample-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T144 | 0-150 | Sentence | denotes | Figure 4 3D Structural Modeling of Glycosylated SARS-CoV-2 Spike Trimer Immunogen Reveals Predictions for Antigen Accessibility and Other Key Features |
| T145 | 151-343 | Sentence | denotes | Results from glycomics and glycoproteomics experiments were combined with results from bioinformatics analyses and used to model several versions of glycosylated SARS-CoV-2 S trimer immunogen. |
| T146 | 344-451 | Sentence | denotes | (A) Sequence of the SARS-CoV-2 S immunogen displaying computed antigen accessibility and other information. |
| T147 | 452-533 | Sentence | denotes | Antigen accessibility is indicated by red shading across the amino acid sequence. |
| T148 | 534-737 | Sentence | denotes | (B) Emerging variants confirmed by independent sequencing experiments were analyzed based on the 3D structure of SARS-CoV-2 S to generate a proximity chart to the determined N-linked glycosylation sites. |
| T149 | 738-951 | Sentence | denotes | (C) SARS-CoV-2 S trimer immunogen model from MD simulation displaying abundance glycoforms and antigen accessibility shaded in red for most accessible, white for partial, and black for inaccessible (see Video S1). |
| T150 | 952-1068 | Sentence | denotes | (D) SARS-CoV-2 S trimer immunogen model from MD simulation displaying Oxford Class glycoforms and sequence variants. |
| T151 | 1069-1194 | Sentence | denotes | Asterisk indicates not visible, whereas the box represents three amino acid variants that are clustered together in 3D space. |
| T152 | 1195-1366 | Sentence | denotes | (E) SARS-CoV-2 S trimer immunogen model from MD simulation displaying processed glycoforms plus shading of Thr-323 that has O-glycosylation at low stoichiometry in yellow. |
LitCovid-sample-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T50 | 48-58 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T51 | 313-323 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T52 | 364-374 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T53 | 647-657 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T54 | 742-752 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T55 | 956-966 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T56 | 1199-1209 | Disease | denotes | SARS-CoV-2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-sample-PD-IDO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T83 | 731-736 | http://purl.obolibrary.org/obo/BFO_0000029 | denotes | sites |
LitCovid-sample-PD-FMA
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T89 | 513-523 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T90 | 1134-1144 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
LitCovid-sample-PD-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 674-683 | http://purl.obolibrary.org/obo/MAT_0000491 | denotes | proximity |
LitCovid-sample-PD-GO-BP-0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T63 | 717-730 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T64 | 1321-1334 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sample-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T59 | 717-730 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
| T60 | 1321-1334 | http://purl.obolibrary.org/obo/GO_0070085 | denotes | glycosylation |
LitCovid-sample-Glycan
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G69371PB | denotes | Thr |
| T62 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G00134PL | denotes | Thr |
| T63 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G52865ZM | denotes | Thr |
| T64 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G50601AY | denotes | Thr |
| T65 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G27898GL | denotes | Thr |
| T66 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G90753WM | denotes | Thr |
| T67 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G57814GP | denotes | Thr |
| T68 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G42918SL | denotes | Thr |
| T69 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G81521LC | denotes | Thr |
| T70 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G19289PT | denotes | Thr |
| T71 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G23779KC | denotes | Thr |
| T72 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G94729UX | denotes | Thr |
| T73 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G49708JS | denotes | Thr |
| T74 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G60349YI | denotes | Thr |
| T75 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G63317ON | denotes | Thr |
| T76 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G71284FA | denotes | Thr |
| T77 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G42091PK | denotes | Thr |
| T78 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G39722QK | denotes | Thr |
| T79 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G76637LW | denotes | Thr |
| T80 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G46130CG | denotes | Thr |
| T81 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G05333AM | denotes | Thr |
| T82 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G77428YW | denotes | Thr |
| T83 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G15142RK | denotes | Thr |
| T84 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G06824UZ | denotes | Thr |
| T85 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G48723MN | denotes | Thr |
| T86 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G35093GE | denotes | Thr |
| T87 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G34845TQ | denotes | Thr |
| T88 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G71815PL | denotes | Thr |
| T89 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G97173UR | denotes | Thr |
| T90 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G53453JD | denotes | Thr |
| T91 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G81407LL | denotes | Thr |
| T92 | 1302-1305 | https://glytoucan.org/Structures/Glycans/G46430YF | denotes | Thr |