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PMC:7441788 / 119-750 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 263-272 Body_part denotes malarials http://purl.org/sig/ont/fma/fma46831
T2 445-453 Body_part denotes endosome http://purl.org/sig/ont/fma/fma67180

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 24-48 Disease denotes Coronavirus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 50-58 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 71-118 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T6 71-104 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T7 120-128 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 211-219 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 359-367 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 491-499 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T2 537-545 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T3 600-601 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 231-236 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T6 274-285 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T7 287-289 Chemical denotes CQ http://purl.obolibrary.org/obo/CHEBI_3638
T8 295-313 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T9 369-371 Chemical denotes CQ http://purl.obolibrary.org/obo/CHEBI_3638

LitCovid-sample-MedDRA

Id Subject Object Predicate Lexical cue meddra_id
T1 243-256 http://purl.bioontology.org/ontology/MEDDRA/10022891 denotes investigation http://purl.bioontology.org/ontology/MEDDRA/10062026

LitCovid-sample-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 274-285 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T4 287-289 Chemical denotes CQ http://purl.obolibrary.org/obo/CHEBI_3638
T5 295-313 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T6 369-371 Chemical denotes CQ http://purl.obolibrary.org/obo/CHEBI_3638

LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T2 24-48 Species denotes Coronavirus Disease 2019 NCBItxid:2697049
T3 50-58 Species denotes COVID-19 NCBItxid:2697049
T4 71-118 Species denotes severe acute respiratory syndrome coronavirus 2 NCBItxid:2697049
T5 120-130 Species denotes SARS-CoV-2 NCBItxid:2697049
T6 211-219 Species denotes COVID-19 NCBItxid:2697049
T7 359-367 Species denotes COVID-19 NCBItxid:2697049

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T5 6-14 Sentence denotes Abstract
T6 15-23 Sentence denotes ABSTRACT
T7 24-156 Sentence denotes Coronavirus Disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is spreading worldwide.
T8 157-220 Sentence denotes Antiviral therapy is the most important treatment for COVID-19.
T9 221-368 Sentence denotes Among the drugs under investigation, anti-malarials, chloroquine (CQ) and hydroxychloroquine (HCQ), are being repurposed as treatment for COVID-19.
T10 369-546 Sentence denotes CQ/HCQ were shown to prevent receptor recognition by coronaviruses, inhibit endosome acidification, which interferes with membrane fusion, and exhibit immunomodulatory activity.

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
41 71-118 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
42 120-130 Species denotes SARS-CoV-2 Tax:2697049
43 422-435 Species denotes coronaviruses Tax:11118
48 274-285 Chemical denotes chloroquine MESH:D002738
49 287-289 Chemical denotes CQ MESH:D002738
50 295-313 Chemical denotes hydroxychloroquine MESH:D006886
51 315-318 Chemical denotes HCQ MESH:D006886
63 24-48 Disease denotes Coronavirus Disease 2019 MESH:C000657245
64 50-58 Disease denotes COVID-19 MESH:C000657245
65 211-219 Disease denotes COVID-19 MESH:C000657245
66 359-367 Disease denotes COVID-19 MESH:C000657245

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T1 36-43 http://purl.obolibrary.org/obo/OGMS_0000031 denotes Disease
T2 157-166 http://purl.obolibrary.org/obo/IDO_0000559 denotes Antiviral

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T1 263-272 Body_part denotes malarials http://purl.org/sig/ont/fma/fma46831
T2 445-453 Body_part denotes endosome http://purl.org/sig/ont/fma/fma67180

LitCovid-sample-PD-GO-BP-0

Id Subject Object Predicate Lexical cue
T1 454-467 http://purl.obolibrary.org/obo/GO_0045851 denotes acidification
T2 491-506 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 24-48 Disease denotes Coronavirus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 50-58 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 71-118 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T5 120-130 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T6 211-219 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 359-367 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-sample-GO-BP

Id Subject Object Predicate Lexical cue
T1 454-467 http://purl.obolibrary.org/obo/GO_0045851 denotes acidification
T2 491-506 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 454-467 http://purl.obolibrary.org/obo/GO_0045851 denotes acidification
T2 491-506 http://purl.obolibrary.org/obo/GO_0061025 denotes membrane fusion

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
41 71-118 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
42 120-130 Species denotes SARS-CoV-2 Tax:2697049
43 422-435 Species denotes coronaviruses Tax:11118
48 274-285 Chemical denotes chloroquine MESH:D002738
49 287-289 Chemical denotes CQ MESH:D002738
50 295-313 Chemical denotes hydroxychloroquine MESH:D006886
51 315-318 Chemical denotes HCQ MESH:D006886
63 24-48 Disease denotes Coronavirus Disease 2019 MESH:C000657245
64 50-58 Disease denotes COVID-19 MESH:C000657245
65 211-219 Disease denotes COVID-19 MESH:C000657245
66 359-367 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T5 6-14 Sentence denotes Abstract
T6 15-23 Sentence denotes ABSTRACT
T7 24-156 Sentence denotes Coronavirus Disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is spreading worldwide.
T8 157-220 Sentence denotes Antiviral therapy is the most important treatment for COVID-19.
T9 221-368 Sentence denotes Among the drugs under investigation, anti-malarials, chloroquine (CQ) and hydroxychloroquine (HCQ), are being repurposed as treatment for COVID-19.
T10 369-546 Sentence denotes CQ/HCQ were shown to prevent receptor recognition by coronaviruses, inhibit endosome acidification, which interferes with membrane fusion, and exhibit immunomodulatory activity.