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PMC:7435837 / 2593-3477 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T7 136-143 Body_part denotes capsule http://purl.org/sig/ont/fma/fma85272
T8 162-167 Body_part denotes lipid http://purl.org/sig/ont/fma/fma67264
T9 216-224 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T10 239-247 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T11 306-314 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T12 328-336 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T13 359-364 Body_part denotes sugar http://purl.org/sig/ont/fma/fma82737
T14 478-486 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T15 515-519 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T16 578-586 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T17 621-626 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T18 738-746 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T19 764-777 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T20 779-787 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T21 806-820 Body_part denotes polysaccharide http://purl.org/sig/ont/fma/fma82746
T22 824-839 Body_part denotes oligosaccharide http://purl.org/sig/ont/fma/fma82742

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 136-143 Body_part denotes capsule http://purl.obolibrary.org/obo/UBERON_0003893

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 33-41 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T4 46-54 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T21 13-20 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T22 57-64 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T23 160-161 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 176-184 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T25 230-238 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T26 385-386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 515-519 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T28 621-626 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T29 641-648 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14 162-167 Chemical denotes lipid http://purl.obolibrary.org/obo/CHEBI_18059
T15 216-224 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T16 239-247 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T17 306-314 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T18 328-336 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T19 365-374 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T20 478-486 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T21 578-586 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T22 738-746 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T23 764-777 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T24 779-787 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T25 806-820 Chemical denotes polysaccharide http://purl.obolibrary.org/obo/CHEBI_18154
T26 824-839 Chemical denotes oligosaccharide http://purl.obolibrary.org/obo/CHEBI_50699
T27 868-875 Chemical denotes glycans http://purl.obolibrary.org/obo/CHEBI_18154

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 421-434 http://purl.obolibrary.org/obo/GO_0006493 denotes O-glycosylate
T2 605-620 http://purl.obolibrary.org/obo/GO_0044409 denotes entry into host

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
40 732-737 Gene denotes Spike Gene:43740568
41 572-577 Gene denotes spike Gene:43740568
42 33-41 Species denotes SARS-CoV Tax:694009
43 46-56 Species denotes SARS-CoV-2 Tax:2697049
44 661-674 Species denotes coronaviruses Tax:11118
45 296-301 Gene denotes spike Gene:43740568
46 359-364 Chemical denotes sugar MESH:D000073893
47 397-403 Chemical denotes glycan MESH:D011134
48 415-434 Chemical denotes N- or O-glycosylate
49 806-820 Chemical denotes polysaccharide MESH:D011134
50 824-839 Chemical denotes oligosaccharide MESH:D009844
51 868-875 Chemical denotes glycans MESH:D011134

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T25 0-111 Sentence denotes Encapsulated viruses such as the SARS-CoV and SARS-CoV-2 viruses comprise of some general surface constituents.
T26 112-319 Sentence denotes The surface envelope or capsule is presented as a lipid bilayer membrane that contains various envelope proteins (E), membrane proteins (M), and an outer layer that presents so-called spike (S) proteins [1].
T27 320-414 Sentence denotes M and S proteins are generally rich in sugar molecules that form a so-called glycan structure.
T28 415-565 Sentence denotes N- or O-glycosylate moieties are commonly found in the viral S proteins and they can recognize some cell receptors to which the virion can bind [2,3].
T29 566-627 Sentence denotes These spike proteins facilitate virion entry into host cells.
T30 628-731 Sentence denotes Encapsulated viruses such as the coronaviruses present approximately 200 of these spiky structures [4].
T31 732-884 Sentence denotes Spike proteins are comprised of glycoproteins, proteins that also contain polysaccharide or oligosaccharide moieties otherwise known as glycans [5,6,7].

2_test

Id Subject Object Predicate Lexical cue
32731428-26925438-71421239 316-317 26925438 denotes 1
32731428-10799570-71421240 560-561 10799570 denotes 2
32731428-24736006-71421241 562-563 24736006 denotes 3
32731428-24188132-71421242 877-878 24188132 denotes 5
32731428-27558841-71421243 879-880 27558841 denotes 6
32731428-31121217-71421244 881-882 31121217 denotes 7