PMC:7417788 / 79827-81403 JSON TXT

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LitCovid-PD-FMA-UBERON

LitCovid-PD-UBERON

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T45","span":{"begin":1000,"end":1005},"obj":"Body_part"}],"attributes":[{"id":"A45","pred":"uberon_id","subj":"T45","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"}],"text":"ABBREVIATIONS\nAA, aged healthy adults; ABC, age-associated B cell; ACO, aged COVID-19 onset patients; ACR, aged recovered COVID-19 patients; AH, aged healthy; ASC, antibody-secreting cell; BCs, B cells; CD4 Naive, naive CD4+ cells; CD4 Tcm, central memory CD4+ T cells; CD4 Tem, effector memory CD4+ T cells; CD4 Tex, exhausted CD4+ T cells; CD4 Treg, CD4+ regulatory T cells; CD8 CTL, cytotoxic CD8+ cells; CD8 Naive, naive CD8+ T cells; CD8 Tem, effector memory CD8+ T cells; CD8 Tex, exhausted CD8+ T cells; CyTOF, mass cytometry; DARs, differentially accessible regions; DCs, dendritic cells; DEGs, differentially expressed genes; DETs, differentially expressed transcription factors; GO, Gene Ontology; IFN-γ, interferon-gamma; Intermed, intermediate monocytes; MCs, monocytes; MEGAs, megakaryocytes; NK, natural killer; NK1, CD16− CD56bright NK; NK2, CD16+ CD56dim CD57− NK; NK3, the CD16+ CD56dim CD57+ late NK; NRF1, nuclear respiratory factor 1; PCA, principal component analysis; RBCs, red blood cells; RT-qPCR, quantitative reverse transcription polymerase chain reaction; scATAC-seq, single-cell assay for transposase-accessible chromatin sequencing; scRNA-seq, single-cell RNA sequencing; scTCR/BCR-seq, single-cell paired TCR/BCR sequencing; TCs, T cells; TFs, transcription factors; TNF, tumor necrosis factor; IL, interleukin; T-mito, mitotic T cells; t-SNE, t-distributed stochastic neighbor embedding; UMIs, unique molecular identifiers; YA, young healthy adults; YCO, young COVID-19 onset patients; YCR, young recovered COVID-19 patients; YH, young healthy."}

LitCovid-PD-MONDO

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T148","span":{"begin":77,"end":85},"obj":"Disease"},{"id":"T149","span":{"begin":122,"end":130},"obj":"Disease"},{"id":"T150","span":{"begin":159,"end":162},"obj":"Disease"},{"id":"T151","span":{"begin":1303,"end":1308},"obj":"Disease"},{"id":"T152","span":{"begin":1370,"end":1373},"obj":"Disease"},{"id":"T153","span":{"begin":1493,"end":1501},"obj":"Disease"},{"id":"T154","span":{"begin":1539,"end":1547},"obj":"Disease"}],"attributes":[{"id":"A148","pred":"mondo_id","subj":"T148","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A149","pred":"mondo_id","subj":"T149","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A150","pred":"mondo_id","subj":"T150","obj":"http://purl.obolibrary.org/obo/MONDO_0019018"},{"id":"A151","pred":"mondo_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/MONDO_0005070"},{"id":"A152","pred":"mondo_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/MONDO_0018859"},{"id":"A153","pred":"mondo_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A154","pred":"mondo_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"ABBREVIATIONS\nAA, aged healthy adults; ABC, age-associated B cell; ACO, aged COVID-19 onset patients; ACR, aged recovered COVID-19 patients; AH, aged healthy; ASC, antibody-secreting cell; BCs, B cells; CD4 Naive, naive CD4+ cells; CD4 Tcm, central memory CD4+ T cells; CD4 Tem, effector memory CD4+ T cells; CD4 Tex, exhausted CD4+ T cells; CD4 Treg, CD4+ regulatory T cells; CD8 CTL, cytotoxic CD8+ cells; CD8 Naive, naive CD8+ T cells; CD8 Tem, effector memory CD8+ T cells; CD8 Tex, exhausted CD8+ T cells; CyTOF, mass cytometry; DARs, differentially accessible regions; DCs, dendritic cells; DEGs, differentially expressed genes; DETs, differentially expressed transcription factors; GO, Gene Ontology; IFN-γ, interferon-gamma; Intermed, intermediate monocytes; MCs, monocytes; MEGAs, megakaryocytes; NK, natural killer; NK1, CD16− CD56bright NK; NK2, CD16+ CD56dim CD57− NK; NK3, the CD16+ CD56dim CD57+ late NK; NRF1, nuclear respiratory factor 1; PCA, principal component analysis; RBCs, red blood cells; RT-qPCR, quantitative reverse transcription polymerase chain reaction; scATAC-seq, single-cell assay for transposase-accessible chromatin sequencing; scRNA-seq, single-cell RNA sequencing; scTCR/BCR-seq, single-cell paired TCR/BCR sequencing; TCs, T cells; TFs, transcription factors; TNF, tumor necrosis factor; IL, interleukin; T-mito, mitotic T cells; t-SNE, t-distributed stochastic neighbor embedding; UMIs, unique molecular identifiers; YA, young healthy adults; YCO, young COVID-19 onset patients; YCR, young recovered COVID-19 patients; YH, young healthy."}

LitCovid-PD-CLO

LitCovid-PD-CHEBI

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T171","span":{"begin":14,"end":16},"obj":"Chemical"},{"id":"T4495","span":{"begin":39,"end":42},"obj":"Chemical"},{"id":"T93094","span":{"begin":141,"end":143},"obj":"Chemical"},{"id":"T175","span":{"begin":279,"end":287},"obj":"Chemical"},{"id":"T95325","span":{"begin":448,"end":456},"obj":"Chemical"},{"id":"T91697","span":{"begin":715,"end":725},"obj":"Chemical"},{"id":"T83690","span":{"begin":726,"end":731},"obj":"Chemical"},{"id":"T179","span":{"begin":955,"end":958},"obj":"Chemical"},{"id":"T45210","span":{"begin":1326,"end":1328},"obj":"Chemical"},{"id":"T13591","span":{"begin":1456,"end":1458},"obj":"Chemical"},{"id":"T184","span":{"begin":1558,"end":1560},"obj":"Chemical"}],"attributes":[{"id":"A17051","pred":"chebi_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/CHEBI_15843"},{"id":"A47837","pred":"chebi_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/CHEBI_72816"},{"id":"A81989","pred":"chebi_id","subj":"T4495","obj":"http://purl.obolibrary.org/obo/CHEBI_421707"},{"id":"A25767","pred":"chebi_id","subj":"T93094","obj":"http://purl.obolibrary.org/obo/CHEBI_73771"},{"id":"A52613","pred":"chebi_id","subj":"T175","obj":"http://purl.obolibrary.org/obo/CHEBI_35224"},{"id":"A96299","pred":"chebi_id","subj":"T95325","obj":"http://purl.obolibrary.org/obo/CHEBI_35224"},{"id":"A52063","pred":"chebi_id","subj":"T91697","obj":"http://purl.obolibrary.org/obo/CHEBI_52999"},{"id":"A99236","pred":"chebi_id","subj":"T83690","obj":"http://purl.obolibrary.org/obo/CHEBI_30212"},{"id":"A32729","pred":"chebi_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/CHEBI_36751"},{"id":"A17564","pred":"chebi_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/CHEBI_62248"},{"id":"A55611","pred":"chebi_id","subj":"T45210","obj":"http://purl.obolibrary.org/obo/CHEBI_63895"},{"id":"A92507","pred":"chebi_id","subj":"T45210","obj":"http://purl.obolibrary.org/obo/CHEBI_74072"},{"id":"A11901","pred":"chebi_id","subj":"T13591","obj":"http://purl.obolibrary.org/obo/CHEBI_74879"},{"id":"A2569","pred":"chebi_id","subj":"T184","obj":"http://purl.obolibrary.org/obo/CHEBI_73695"}],"text":"ABBREVIATIONS\nAA, aged healthy adults; ABC, age-associated B cell; ACO, aged COVID-19 onset patients; ACR, aged recovered COVID-19 patients; AH, aged healthy; ASC, antibody-secreting cell; BCs, B cells; CD4 Naive, naive CD4+ cells; CD4 Tcm, central memory CD4+ T cells; CD4 Tem, effector memory CD4+ T cells; CD4 Tex, exhausted CD4+ T cells; CD4 Treg, CD4+ regulatory T cells; CD8 CTL, cytotoxic CD8+ cells; CD8 Naive, naive CD8+ T cells; CD8 Tem, effector memory CD8+ T cells; CD8 Tex, exhausted CD8+ T cells; CyTOF, mass cytometry; DARs, differentially accessible regions; DCs, dendritic cells; DEGs, differentially expressed genes; DETs, differentially expressed transcription factors; GO, Gene Ontology; IFN-γ, interferon-gamma; Intermed, intermediate monocytes; MCs, monocytes; MEGAs, megakaryocytes; NK, natural killer; NK1, CD16− CD56bright NK; NK2, CD16+ CD56dim CD57− NK; NK3, the CD16+ CD56dim CD57+ late NK; NRF1, nuclear respiratory factor 1; PCA, principal component analysis; RBCs, red blood cells; RT-qPCR, quantitative reverse transcription polymerase chain reaction; scATAC-seq, single-cell assay for transposase-accessible chromatin sequencing; scRNA-seq, single-cell RNA sequencing; scTCR/BCR-seq, single-cell paired TCR/BCR sequencing; TCs, T cells; TFs, transcription factors; TNF, tumor necrosis factor; IL, interleukin; T-mito, mitotic T cells; t-SNE, t-distributed stochastic neighbor embedding; UMIs, unique molecular identifiers; YA, young healthy adults; YCO, young COVID-19 onset patients; YCR, young recovered COVID-19 patients; YH, young healthy."}

LitCovid-PD-GO-BP

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T310","span":{"begin":249,"end":255},"obj":"http://purl.obolibrary.org/obo/GO_0007613"},{"id":"T311","span":{"begin":288,"end":294},"obj":"http://purl.obolibrary.org/obo/GO_0007613"},{"id":"T312","span":{"begin":457,"end":463},"obj":"http://purl.obolibrary.org/obo/GO_0007613"},{"id":"T313","span":{"begin":666,"end":687},"obj":"http://purl.obolibrary.org/obo/GO_0000981"},{"id":"T314","span":{"begin":666,"end":679},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T315","span":{"begin":1035,"end":1056},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T316","span":{"begin":1043,"end":1056},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T317","span":{"begin":1275,"end":1296},"obj":"http://purl.obolibrary.org/obo/GO_0000981"},{"id":"T318","span":{"begin":1275,"end":1288},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T319","span":{"begin":1309,"end":1317},"obj":"http://purl.obolibrary.org/obo/GO_0070265"},{"id":"T320","span":{"begin":1309,"end":1317},"obj":"http://purl.obolibrary.org/obo/GO_0019835"},{"id":"T321","span":{"begin":1309,"end":1317},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T322","span":{"begin":1309,"end":1317},"obj":"http://purl.obolibrary.org/obo/GO_0001906"}],"text":"ABBREVIATIONS\nAA, aged healthy adults; ABC, age-associated B cell; ACO, aged COVID-19 onset patients; ACR, aged recovered COVID-19 patients; AH, aged healthy; ASC, antibody-secreting cell; BCs, B cells; CD4 Naive, naive CD4+ cells; CD4 Tcm, central memory CD4+ T cells; CD4 Tem, effector memory CD4+ T cells; CD4 Tex, exhausted CD4+ T cells; CD4 Treg, CD4+ regulatory T cells; CD8 CTL, cytotoxic CD8+ cells; CD8 Naive, naive CD8+ T cells; CD8 Tem, effector memory CD8+ T cells; CD8 Tex, exhausted CD8+ T cells; CyTOF, mass cytometry; DARs, differentially accessible regions; DCs, dendritic cells; DEGs, differentially expressed genes; DETs, differentially expressed transcription factors; GO, Gene Ontology; IFN-γ, interferon-gamma; Intermed, intermediate monocytes; MCs, monocytes; MEGAs, megakaryocytes; NK, natural killer; NK1, CD16− CD56bright NK; NK2, CD16+ CD56dim CD57− NK; NK3, the CD16+ CD56dim CD57+ late NK; NRF1, nuclear respiratory factor 1; PCA, principal component analysis; RBCs, red blood cells; RT-qPCR, quantitative reverse transcription polymerase chain reaction; scATAC-seq, single-cell assay for transposase-accessible chromatin sequencing; scRNA-seq, single-cell RNA sequencing; scTCR/BCR-seq, single-cell paired TCR/BCR sequencing; TCs, T cells; TFs, transcription factors; TNF, tumor necrosis factor; IL, interleukin; T-mito, mitotic T cells; t-SNE, t-distributed stochastic neighbor embedding; UMIs, unique molecular identifiers; YA, young healthy adults; YCO, young COVID-19 onset patients; YCR, young recovered COVID-19 patients; YH, young healthy."}

LitCovid-sentences

{"project":"LitCovid-sentences","denotations":[{"id":"T463","span":{"begin":0,"end":13},"obj":"Sentence"},{"id":"T464","span":{"begin":14,"end":1576},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"ABBREVIATIONS\nAA, aged healthy adults; ABC, age-associated B cell; ACO, aged COVID-19 onset patients; ACR, aged recovered COVID-19 patients; AH, aged healthy; ASC, antibody-secreting cell; BCs, B cells; CD4 Naive, naive CD4+ cells; CD4 Tcm, central memory CD4+ T cells; CD4 Tem, effector memory CD4+ T cells; CD4 Tex, exhausted CD4+ T cells; CD4 Treg, CD4+ regulatory T cells; CD8 CTL, cytotoxic CD8+ cells; CD8 Naive, naive CD8+ T cells; CD8 Tem, effector memory CD8+ T cells; CD8 Tex, exhausted CD8+ T cells; CyTOF, mass cytometry; DARs, differentially accessible regions; DCs, dendritic cells; DEGs, differentially expressed genes; DETs, differentially expressed transcription factors; GO, Gene Ontology; IFN-γ, interferon-gamma; Intermed, intermediate monocytes; MCs, monocytes; MEGAs, megakaryocytes; NK, natural killer; NK1, CD16− CD56bright NK; NK2, CD16+ CD56dim CD57− NK; NK3, the CD16+ CD56dim CD57+ late NK; NRF1, nuclear respiratory factor 1; PCA, principal component analysis; RBCs, red blood cells; RT-qPCR, quantitative reverse transcription polymerase chain reaction; scATAC-seq, single-cell assay for transposase-accessible chromatin sequencing; scRNA-seq, single-cell RNA sequencing; scTCR/BCR-seq, single-cell paired TCR/BCR sequencing; TCs, T cells; TFs, transcription factors; TNF, tumor necrosis factor; IL, interleukin; T-mito, mitotic T cells; t-SNE, t-distributed stochastic neighbor embedding; UMIs, unique molecular identifiers; YA, young healthy adults; YCO, young COVID-19 onset patients; YCR, young recovered COVID-19 patients; YH, young healthy."}

LitCovid-PD-HP

{"project":"LitCovid-PD-HP","denotations":[{"id":"T15","span":{"begin":1303,"end":1308},"obj":"Phenotype"}],"attributes":[{"id":"A15","pred":"hp_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/HP_0002664"}],"text":"ABBREVIATIONS\nAA, aged healthy adults; ABC, age-associated B cell; ACO, aged COVID-19 onset patients; ACR, aged recovered COVID-19 patients; AH, aged healthy; ASC, antibody-secreting cell; BCs, B cells; CD4 Naive, naive CD4+ cells; CD4 Tcm, central memory CD4+ T cells; CD4 Tem, effector memory CD4+ T cells; CD4 Tex, exhausted CD4+ T cells; CD4 Treg, CD4+ regulatory T cells; CD8 CTL, cytotoxic CD8+ cells; CD8 Naive, naive CD8+ T cells; CD8 Tem, effector memory CD8+ T cells; CD8 Tex, exhausted CD8+ T cells; CyTOF, mass cytometry; DARs, differentially accessible regions; DCs, dendritic cells; DEGs, differentially expressed genes; DETs, differentially expressed transcription factors; GO, Gene Ontology; IFN-γ, interferon-gamma; Intermed, intermediate monocytes; MCs, monocytes; MEGAs, megakaryocytes; NK, natural killer; NK1, CD16− CD56bright NK; NK2, CD16+ CD56dim CD57− NK; NK3, the CD16+ CD56dim CD57+ late NK; NRF1, nuclear respiratory factor 1; PCA, principal component analysis; RBCs, red blood cells; RT-qPCR, quantitative reverse transcription polymerase chain reaction; scATAC-seq, single-cell assay for transposase-accessible chromatin sequencing; scRNA-seq, single-cell RNA sequencing; scTCR/BCR-seq, single-cell paired TCR/BCR sequencing; TCs, T cells; TFs, transcription factors; TNF, tumor necrosis factor; IL, interleukin; T-mito, mitotic T cells; t-SNE, t-distributed stochastic neighbor embedding; UMIs, unique molecular identifiers; YA, young healthy adults; YCO, young COVID-19 onset patients; YCR, young recovered COVID-19 patients; YH, young healthy."}

PMC:7417788 / 79827-81403 JSONTXT

Annnotations TAB JSON ListView MergeView

PMC:7417788 / 79827-81403 JSON TXT