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PMC:7417788 / 79827-81403 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T569 61-65 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T570 164-172 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T571 183-187 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T572 196-201 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T573 225-230 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T574 263-268 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T575 302-307 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T576 335-340 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T577 357-375 Body_part denotes regulatory T cells http://purl.org/sig/ont/fma/fma84070
T578 370-375 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T579 401-406 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T580 432-437 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T581 471-476 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T582 504-509 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T583 580-595 Body_part denotes dendritic cells http://purl.org/sig/ont/fma/fma273565
T584 590-595 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T585 693-697 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T586 756-765 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T587 772-781 Body_part denotes monocytes http://purl.org/sig/ont/fma/fma62864
T588 783-788 Body_part denotes MEGAs http://purl.org/sig/ont/fma/fma83555
T589 790-804 Body_part denotes megakaryocytes http://purl.org/sig/ont/fma/fma83555
T590 996-1011 Body_part denotes red blood cells http://purl.org/sig/ont/fma/fma62845
T591 1006-1011 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T592 1103-1107 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T593 1141-1150 Body_part denotes chromatin http://purl.org/sig/ont/fma/fma67526
T594 1181-1185 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T595 1186-1189 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T596 1224-1228 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T597 1263-1268 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T598 1326-1328 Body_part denotes IL http://purl.org/sig/ont/fma/fma86578
T599 1330-1341 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578
T600 1361-1366 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T45 1000-1005 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T148 77-85 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T149 122-130 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T150 159-162 Disease denotes ASC http://purl.obolibrary.org/obo/MONDO_0019018
T151 1303-1308 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070
T152 1370-1373 Disease denotes SNE http://purl.obolibrary.org/obo/MONDO_0018859
T153 1493-1501 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T154 1539-1547 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1247 14-16 http://purl.obolibrary.org/obo/CLO_0001627 denotes AA
T1248 59-65 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T1249 183-187 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1250 189-192 http://purl.obolibrary.org/obo/CL_0000236 denotes BCs
T1251 194-201 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells
T1252 203-206 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1253 220-223 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1254 225-230 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1255 232-235 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1256 256-259 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1257 261-268 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T1258 270-273 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1259 295-298 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1260 300-307 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T1261 309-312 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1262 328-331 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1263 333-340 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T1264 342-345 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1265 346-350 http://purl.obolibrary.org/obo/CL_0000792 denotes Treg
T1266 352-355 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T1267 357-375 http://purl.obolibrary.org/obo/CL_0000815 denotes regulatory T cells
T1268 377-380 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T1269 396-399 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T1270 401-406 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1271 408-411 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T1272 425-428 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T1273 430-437 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T1274 439-442 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T1275 464-467 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T1276 469-476 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T1277 478-481 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T1278 497-500 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T1279 502-509 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T1280 575-578 http://purl.obolibrary.org/obo/CL_0000451 denotes DCs
T1281 580-595 http://purl.obolibrary.org/obo/CL_0000451 denotes dendritic cells
T1282 628-633 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T1283 693-697 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T1284 715-731 http://purl.obolibrary.org/obo/PR_000000017 denotes interferon-gamma
T1285 756-765 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T1286 767-770 http://purl.obolibrary.org/obo/CL_0000576 denotes MCs
T1287 772-781 http://purl.obolibrary.org/obo/CL_0000576 denotes monocytes
T1288 996-1011 http://purl.obolibrary.org/obo/CL_0000232 denotes red blood cells
T1289 1103-1107 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1290 1181-1185 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1291 1224-1228 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1292 1256-1259 http://purl.obolibrary.org/obo/CLO_0050938 denotes TCs
T1293 1256-1259 http://purl.obolibrary.org/obo/CL_0000084 denotes TCs
T1294 1261-1268 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T1295 1359-1366 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T171 14-16 Chemical denotes AA http://purl.obolibrary.org/obo/CHEBI_15843|http://purl.obolibrary.org/obo/CHEBI_72816
T4495 39-42 Chemical denotes ABC http://purl.obolibrary.org/obo/CHEBI_421707
T93094 141-143 Chemical denotes AH http://purl.obolibrary.org/obo/CHEBI_73771
T175 279-287 Chemical denotes effector http://purl.obolibrary.org/obo/CHEBI_35224
T95325 448-456 Chemical denotes effector http://purl.obolibrary.org/obo/CHEBI_35224
T91697 715-725 Chemical denotes interferon http://purl.obolibrary.org/obo/CHEBI_52999
T83690 726-731 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T179 955-958 Chemical denotes PCA http://purl.obolibrary.org/obo/CHEBI_36751|http://purl.obolibrary.org/obo/CHEBI_62248
T45210 1326-1328 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T13591 1456-1458 Chemical denotes YA http://purl.obolibrary.org/obo/CHEBI_74879
T184 1558-1560 Chemical denotes YH http://purl.obolibrary.org/obo/CHEBI_73695

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T310 249-255 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T311 288-294 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T312 457-463 http://purl.obolibrary.org/obo/GO_0007613 denotes memory
T313 666-687 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factors
T314 666-679 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T315 1035-1056 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T316 1043-1056 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T317 1275-1296 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factors
T318 1275-1288 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T319 1309-1317 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T320 1309-1317 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T321 1309-1317 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T322 1309-1317 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T463 0-13 Sentence denotes ABBREVIATIONS
T464 14-1576 Sentence denotes AA, aged healthy adults; ABC, age-associated B cell; ACO, aged COVID-19 onset patients; ACR, aged recovered COVID-19 patients; AH, aged healthy; ASC, antibody-secreting cell; BCs, B cells; CD4 Naive, naive CD4+ cells; CD4 Tcm, central memory CD4+ T cells; CD4 Tem, effector memory CD4+ T cells; CD4 Tex, exhausted CD4+ T cells; CD4 Treg, CD4+ regulatory T cells; CD8 CTL, cytotoxic CD8+ cells; CD8 Naive, naive CD8+ T cells; CD8 Tem, effector memory CD8+ T cells; CD8 Tex, exhausted CD8+ T cells; CyTOF, mass cytometry; DARs, differentially accessible regions; DCs, dendritic cells; DEGs, differentially expressed genes; DETs, differentially expressed transcription factors; GO, Gene Ontology; IFN-γ, interferon-gamma; Intermed, intermediate monocytes; MCs, monocytes; MEGAs, megakaryocytes; NK, natural killer; NK1, CD16− CD56bright NK; NK2, CD16+ CD56dim CD57− NK; NK3, the CD16+ CD56dim CD57+ late NK; NRF1, nuclear respiratory factor 1; PCA, principal component analysis; RBCs, red blood cells; RT-qPCR, quantitative reverse transcription polymerase chain reaction; scATAC-seq, single-cell assay for transposase-accessible chromatin sequencing; scRNA-seq, single-cell RNA sequencing; scTCR/BCR-seq, single-cell paired TCR/BCR sequencing; TCs, T cells; TFs, transcription factors; TNF, tumor necrosis factor; IL, interleukin; T-mito, mitotic T cells; t-SNE, t-distributed stochastic neighbor embedding; UMIs, unique molecular identifiers; YA, young healthy adults; YCO, young COVID-19 onset patients; YCR, young recovered COVID-19 patients; YH, young healthy.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T15 1303-1308 Phenotype denotes tumor http://purl.obolibrary.org/obo/HP_0002664