PMC:7417788 / 70100-70843
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1488 | 169-177 | CHEBI:28073;CHEBI:28073 | denotes | Chromium |
| T1489 | 256-257 | CL:0000236 | denotes | T |
| T1490 | 258-264 | CL:0000236 | denotes | B cell |
| T1491 | 357-361 | PR:000003906 | denotes | CDR3 |
| T1492 | 398-402 | SO:0000704 | denotes | gene |
| T1493 | 638-639 | CL:0000084 | denotes | T |
| T1494 | 641-648 | CL:0000236 | denotes | B cells |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T506 | 185-189 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T507 | 260-264 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T508 | 398-402 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T509 | 643-648 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T140 | 689-692 | Disease | denotes | SNE | http://purl.obolibrary.org/obo/MONDO_0018859 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1153 | 167-168 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1154 | 185-189 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T1155 | 258-264 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cell |
| T1156 | 398-402 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T1157 | 548-549 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T1158 | 641-648 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
| T1159 | 685-686 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T151 | 169-177 | Chemical | denotes | Chromium | http://purl.obolibrary.org/obo/CHEBI_28073 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T393 | 0-44 | Sentence | denotes | Sequencing and analysis of TCR and BCR V(D)J |
| T394 | 45-225 | Sentence | denotes | PCR amplification was done to enrich the full-length TCR/BCR V(D)J segments for the amplified cDNA from 5′ libraries with a Chromium Single-Cell V(D)J Enrichment kit (10 Genomics). |
| T395 | 226-403 | Sentence | denotes | The TCR/BCR sequences of each T/B cell were clustered using the CellRanger vdj pipeline (version 3.1.0, allowing identification of CDR3 sequence and the rearranged TCR/BCR gene. |
| T396 | 404-515 | Sentence | denotes | Analysis was performed using Loupe V(D)J Browser version 2.0.1 (https://support.10xgenomics.com, 10x Genomics). |
| T397 | 516-624 | Sentence | denotes | In summary, barcode information a containing clonotype frequency and TCR/BCR diversity metric were obtained. |
| T398 | 625-743 | Sentence | denotes | We projected T /B cells with dominant TCR/BCR clonotypes on a t-SNE plot using barcode information (Wen et al., 2020). |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32780218-29891535-132718731 | 737-741 | 29891535 | denotes | 2020 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1470 | 27-30 | Gene | denotes | TCR | Gene:6962 |
| 1471 | 35-38 | Gene | denotes | BCR | Gene:613 |
| 1483 | 98-101 | Gene | denotes | TCR | Gene:6962 |
| 1484 | 102-105 | Gene | denotes | BCR | Gene:613 |
| 1485 | 230-233 | Gene | denotes | TCR | Gene:6962 |
| 1486 | 234-237 | Gene | denotes | BCR | Gene:613 |
| 1487 | 390-393 | Gene | denotes | TCR | Gene:6962 |
| 1488 | 394-397 | Gene | denotes | BCR | Gene:613 |
| 1489 | 585-588 | Gene | denotes | TCR | Gene:6962 |
| 1490 | 589-592 | Gene | denotes | BCR | Gene:613 |
| 1491 | 663-666 | Gene | denotes | TCR | Gene:6962 |
| 1492 | 667-670 | Gene | denotes | BCR | Gene:613 |
| 1493 | 207-210 | Gene | denotes | kit | Gene:3815 |