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PMC:7417788 / 69435-70098 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1467 24-29 GO:0007568 denotes aging
T1468 33-44 CL:0000080 denotes circulating
T1469 45-51 UBERON:0002405;CL:0000738 denotes immune
T1470 52-57 CL:0000738 denotes cells
T1471 82-87 SO:0000704 denotes genes
T1472 117-122 SO:0000704 denotes genes
T1473 130-136 UBERON:0002405;CL:0000738 denotes immune
T1474 137-142 CL:0000738 denotes cells
T1475 144-149 GO:0007568 denotes Aging
T1476 230-240 GO:0010467 denotes expression
T1477 248-253 SO:0000704 denotes genes
T1478 280-285 GO:0007568 denotes aging
T1479 294-300 UBERON:0002405;CL:0000738 denotes immune
T1480 301-305 CL:0000738 denotes cell
T1481 349-354 GO:0007568 denotes aging
T1482 460-465 GO:0007568 denotes aging
T1483 466-470 SO:0000704 denotes gene
T1484 560-565 GO:0007568 denotes aging
T1485 566-571 SO:0000704 denotes genes
T1486 572-581 GO:0010467 denotes expressed
T1487 623-632 GO:0010467 denotes expressed

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T496 52-57 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T497 137-142 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T498 180-185 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T499 301-305 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T500 365-370 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T501 375-379 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T502 466-470 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T503 488-492 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T504 587-591 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T505 638-642 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1139 52-57 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1140 82-87 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T1141 117-122 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T1142 137-142 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1143 180-185 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1144 248-253 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T1145 301-311 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T1146 365-370 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1147 375-379 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1148 466-470 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T1149 488-492 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1150 566-571 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T1151 587-591 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1152 638-642 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T303 24-29 http://purl.obolibrary.org/obo/GO_0007568 denotes aging
T304 144-149 http://purl.obolibrary.org/obo/GO_0007568 denotes Aging
T305 280-285 http://purl.obolibrary.org/obo/GO_0007568 denotes aging
T306 349-354 http://purl.obolibrary.org/obo/GO_0007568 denotes aging
T307 460-465 http://purl.obolibrary.org/obo/GO_0007568 denotes aging
T308 560-565 http://purl.obolibrary.org/obo/GO_0007568 denotes aging

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T389 0-143 Sentence denotes To assess the impact of aging in circulating immune cells, we selected the top 20 genes out of 60 common upregulated genes in all immune cells.
T390 144-266 Sentence denotes Aging scores were estimated for all cells as the average of the scaled (Z-normalized) expression of the genes in the list.
T391 267-395 Sentence denotes The score of aging for all immune cell types can be used to predict the effect of aging on single cells and cell subtype levels.
T392 396-663 Sentence denotes Calculation of the scores was done as follows: the score of the aging gene set in the given cell-subset (named as X) was computed as the sum of all UMI for all the aging genes expressed in X cell, divided by the sum of all UMI expressed by X cell (Pont et al., 2019).

2_test

Id Subject Object Predicate Lexical cue
32780218-29891535-132718730 657-661 29891535 denotes 2019