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PMC:7417788 / 62043-62905 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1389 87-90 CHEBI:37958;CHEBI:37958 denotes dye
T1390 249-259 GO:0042571 denotes antibodies
T1391 286-296 GO:0042571 denotes antibodies
T1392 341-345 PR:000001002 denotes CD19
T1393 346-349 PR:000004122 denotes APC
T1394 375-379 PR:000001173 denotes CD88
T1395 412-416 PR:000001857 denotes CD89
T1396 448-451 PR:000029150 denotes HLA
T1397 455-459 CHEBI:37926;CHEBI:37926 denotes FITC
T1398 485-490 PR:000001013 denotes CD11c
T1399 535-538 CHEBI:37989;CHEBI:37989 denotes Cy5
T1400 548-551 UBERON:0004356 denotes AER
T1401 568-572 PR:000002027 denotes CD1c
T1402 604-609 PR:000001324 denotes CD147

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T447 225-230 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T448 448-451 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T135 626-628 Disease denotes BD http://purl.obolibrary.org/obo/MONDO_0007191
T136 744-746 Disease denotes BD http://purl.obolibrary.org/obo/MONDO_0007191
T137 757-759 Disease denotes BD http://purl.obolibrary.org/obo/MONDO_0007191

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1062 107-111 http://purl.obolibrary.org/obo/CLO_0001387 denotes 4 °C
T1063 201-203 http://purl.obolibrary.org/obo/CLO_0009877 denotes NY
T1064 225-230 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1065 274-278 http://purl.obolibrary.org/obo/CLO_0001387 denotes 4 °C
T1066 307-310 http://purl.obolibrary.org/obo/CLO_0052882 denotes CD3
T1067 307-310 http://purl.obolibrary.org/obo/CLO_0053434 denotes CD3
T1068 341-345 http://purl.obolibrary.org/obo/CLO_0053432 denotes CD19
T1069 394-396 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T1070 467-471 http://purl.obolibrary.org/obo/CLO_0007180 denotes L243
T1071 485-490 http://purl.obolibrary.org/obo/PR_000001013 denotes CD11c
T1072 521-523 http://purl.obolibrary.org/obo/CLO_0052676 denotes Fc

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T98657 19-28 Chemical denotes phosphate http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474
T60012 87-90 Chemical denotes dye http://purl.obolibrary.org/obo/CHEBI_37958
T5861 201-203 Chemical denotes NY http://purl.obolibrary.org/obo/CHEBI_73427
T75437 346-349 Chemical denotes APC http://purl.obolibrary.org/obo/CHEBI_80551
T20098 380-382 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T92 394-396 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T95897 417-419 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T65030 452-454 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T97 455-459 Chemical denotes FITC http://purl.obolibrary.org/obo/CHEBI_37926
T20259 610-612 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T74014 659-661 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T343 0-210 Sentence denotes PBMCs suspended in phosphate buffered saline (PBS) were cultured with Live/Dead yellow dye (Invitrogen) at 4 °C for 30 min and then washed once with 1 mL of PBS containing 1% FBS (GIBCO, Grand Island, NY, USA).
T344 211-279 Sentence denotes Subsequently, cells were treated with antibodies for 30 min at 4 °C.
T345 280-686 Sentence denotes These antibodies included: CD3-BV785 (clone SK7, Biolegend), CD19-APC (clone HB19, Biolegend), CD88-PE/Cy7 (clone S5/1, Biolegend), CD89-PE/Cy7 (clone A59, Biolegend), HLA-DR-FITC (clone L243, Biolegend), CD11c-BV421 (clone 3.9, Biolegend), FcεRIa- PercP/Cy5.5 (clone AER-37, Biolegend), CD1c-BV650 (clone L161, Biolegend), CD147-PE (clone HIM6, BD biosciences), CD371 (CLEC12A)-PE (clone 50C1, Biolegend).
T346 687-862 Sentence denotes Analysis of PBMCs with flow cytometry was conducted with BD Fortessa (BD Biosciences) and the results were evaluated with FlowJo (version 10.0.7, Tree Star, Ashland, OR, USA).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1395 341-345 Gene denotes CD19 Gene:930
1396 375-379 Gene denotes CD88 Gene:728
1397 412-416 Gene denotes CD89 Gene:2204
1398 485-490 Gene denotes CD11c Gene:3687
1399 568-572 Gene denotes CD1c Gene:911
1400 604-609 Gene denotes CD147 Gene:682
1401 643-648 Gene denotes CD371 Gene:160364
1402 650-657 Gene denotes CLEC12A Gene:160364
1403 19-44 Chemical denotes phosphate buffered saline
1404 46-49 Chemical denotes PBS
1405 157-160 Chemical denotes PBS
1406 175-178 Disease denotes FBS MESH:D005198
1407 346-349 Disease denotes APC MESH:D011125
1408 521-527 Disease denotes FcεRIa
1409 311-316 CellLine denotes BV785 CVCL:N487
1410 324-327 CellLine denotes SK7 CVCL:L697
1411 491-496 CellLine denotes BV421 CVCL:0182