PMC:7414629 / 2975-4611
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T16 | 552-562 | Body_part | denotes | fingertips | http://purl.org/sig/ont/fma/fma322377 |
| T17 | 567-571 | Body_part | denotes | toes | http://purl.org/sig/ont/fma/fma70664 |
| T18 | 733-738 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T19 | 764-769 | Body_part | denotes | heart | http://purl.org/sig/ont/fma/fma7088 |
| T20 | 971-980 | Body_part | denotes | meningeal | http://purl.org/sig/ont/fma/fma231572 |
| T21 | 1022-1035 | Body_part | denotes | cranial nerve | http://purl.org/sig/ont/fma/fma5865 |
| T22 | 1048-1054 | Body_part | denotes | muscle | http://purl.org/sig/ont/fma/fma32558 |
| T23 | 1191-1208 | Body_part | denotes | upper extremities | http://purl.org/sig/ont/fma/fma7183 |
| T24 | 1256-1273 | Body_part | denotes | lower extremities | http://purl.org/sig/ont/fma/fma7184 |
| T25 | 1280-1286 | Body_part | denotes | tendon | http://purl.org/sig/ont/fma/fma9721 |
| T26 | 1345-1363 | Body_part | denotes | upper motor neuron | http://purl.org/sig/ont/fma/fma84631 |
| T27 | 1536-1541 | Body_part | denotes | spine | http://purl.org/sig/ont/fma/fma13478 |
| T28 | 1557-1566 | Body_part | denotes | Meningeal | http://purl.org/sig/ont/fma/fma231572 |
| T29 | 1588-1606 | Body_part | denotes | upper motor neuron | http://purl.org/sig/ont/fma/fma84631 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T16 | 733-738 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T17 | 764-769 | Body_part | denotes | heart | http://purl.obolibrary.org/obo/UBERON_0000948 |
| T18 | 1022-1035 | Body_part | denotes | cranial nerve | http://purl.obolibrary.org/obo/UBERON_0001785 |
| T19 | 1030-1035 | Body_part | denotes | nerve | http://purl.obolibrary.org/obo/UBERON_0001021 |
| T20 | 1143-1148 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
| T21 | 1280-1286 | Body_part | denotes | tendon | http://purl.obolibrary.org/obo/UBERON_0000043 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T42 | 70-82 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
| T43 | 221-229 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T44 | 240-248 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T33 | 35-36 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T34 | 61-69 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | arterial |
| T35 | 61-69 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | arterial |
| T36 | 151-152 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T37 | 179-180 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T38 | 299-305 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T39 | 316-317 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T40 | 393-396 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T41 | 492-497 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | limbs |
| T42 | 524-525 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T43 | 733-738 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T44 | 733-738 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T45 | 764-769 | http://purl.obolibrary.org/obo/UBERON_0000948 | denotes | heart |
| T46 | 764-769 | http://purl.obolibrary.org/obo/UBERON_0007100 | denotes | heart |
| T47 | 764-769 | http://purl.obolibrary.org/obo/UBERON_0015228 | denotes | heart |
| T48 | 764-769 | http://www.ebi.ac.uk/efo/EFO_0000815 | denotes | heart |
| T49 | 813-815 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T50 | 1030-1035 | http://purl.obolibrary.org/obo/UBERON_0001021 | denotes | nerve |
| T51 | 1048-1054 | http://purl.obolibrary.org/obo/UBERON_0001630 | denotes | muscle |
| T52 | 1048-1054 | http://purl.obolibrary.org/obo/UBERON_0005090 | denotes | muscle |
| T53 | 1048-1054 | http://www.ebi.ac.uk/efo/EFO_0000801 | denotes | muscle |
| T54 | 1048-1054 | http://www.ebi.ac.uk/efo/EFO_0001949 | denotes | muscle |
| T55 | 1099-1104 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | limbs |
| T56 | 1110-1111 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T57 | 1152-1155 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 4/5 |
| T58 | 1173-1176 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 3/5 |
| T59 | 1197-1208 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T60 | 1210-1213 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 4/5 |
| T61 | 1235-1238 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 3/5 |
| T62 | 1262-1273 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | extremities |
| T63 | 1280-1286 | http://www.ebi.ac.uk/cellline#tendon | denotes | tendon |
| T64 | 1280-1286 | http://www.ebi.ac.uk/efo/EFO_0000952 | denotes | tendon |
| T65 | 1384-1385 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T66 | 1461-1465 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 118 | 24-29 | Species | denotes | woman | Tax:9606 |
| 119 | 240-250 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 120 | 707-714 | Species | denotes | patient | Tax:9606 |
| 121 | 84-93 | Chemical | denotes | valsartan | MESH:D000068756 |
| 122 | 120-130 | Chemical | denotes | l-thyroxin | |
| 123 | 825-831 | Chemical | denotes | oxygen | MESH:D010100 |
| 124 | 70-82 | Disease | denotes | hypertension | MESH:D006973 |
| 125 | 105-118 | Disease | denotes | hypothyreosis | |
| 126 | 153-162 | Disease | denotes | dry cough | MESH:D003371 |
| 127 | 169-174 | Disease | denotes | fever | MESH:D005334 |
| 128 | 189-197 | Disease | denotes | weakness | MESH:D018908 |
| 129 | 221-229 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 130 | 377-385 | Disease | denotes | infected | MESH:D007239 |
| 131 | 476-484 | Disease | denotes | weakness | MESH:D018908 |
| 132 | 526-544 | Disease | denotes | tingling sensation | MESH:D012678 |
| 133 | 892-899 | Disease | denotes | dyspnea | MESH:D004417 |
| 134 | 971-1014 | Disease | denotes | meningeal irritation signs or abnormalities | MESH:D001523 |
| 135 | 1345-1372 | Disease | denotes | upper motor neuron disorder | MESH:D016472 |
| 136 | 1557-1583 | Disease | denotes | Meningeal irritation signs | MESH:D001523 |
| 137 | 1588-1615 | Disease | denotes | upper motor neuron disorder | MESH:D016472 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 84-93 | Chemical | denotes | valsartan | http://purl.obolibrary.org/obo/CHEBI_9927 |
| T2 | 825-831 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T18 | 70-82 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
| T19 | 153-162 | Phenotype | denotes | dry cough | http://purl.obolibrary.org/obo/HP_0031246 |
| T20 | 164-174 | Phenotype | denotes | mild fever | http://purl.obolibrary.org/obo/HP_0011134 |
| T21 | 181-197 | Phenotype | denotes | general weakness | http://purl.obolibrary.org/obo/HP_0003324 |
| T22 | 526-534 | Phenotype | denotes | tingling | http://purl.obolibrary.org/obo/HP_0003401 |
| T23 | 892-899 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T24 | 1001-1035 | Phenotype | denotes | abnormalities in the cranial nerve | http://purl.obolibrary.org/obo/HP_0001291 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28 | 0-198 | Sentence | denotes | A 56-year-old Caucasian woman with a medical history of mild arterial hypertension (valsartan 40 mg) and hypothyreosis (l-thyroxin 25 µg) suffers from a dry cough, mild fever and a general weakness. |
| T29 | 199-315 | Sentence | denotes | In the context of the COVID-19 pandemic, SARS-CoV-2 RT-PCR on nasopharyngeal swab was performed and tested positive. |
| T30 | 316-349 | Sentence | denotes | A quarantine at home was decreed. |
| T31 | 350-445 | Sentence | denotes | The presumed contact to an infected person has been 12 days before the first symptoms appeared. |
| T32 | 446-572 | Sentence | denotes | Seven days later, she noticed weakness of her limbs while climbing stairs and a tingling sensation in all fingertips and toes. |
| T33 | 573-677 | Sentence | denotes | She was admitted to our emergency department 3 days after the occurrence of these neurological symptoms. |
| T34 | 678-862 | Sentence | denotes | On physical examination, the patient was afebrile with blood pressure at 135/82 mmHg, heart rate of 110 beats/min, respiratory rate at 18/min, and oxygen saturation of 95% on room air. |
| T35 | 863-931 | Sentence | denotes | She was conscious and had no dyspnea at the time of hospitalization. |
| T36 | 932-1043 | Sentence | denotes | The neurological examination showed no meningeal irritation signs or abnormalities in the cranial nerve status. |
| T37 | 1044-1274 | Sentence | denotes | The muscle strength examination showed paresis in four limbs with a Medical Research Council (MRC) scale of 4/5 in the proximal, 3/5 in the distal upper extremities, 4/5 in the proximal, and 3/5 in distal in the lower extremities. |
| T38 | 1275-1373 | Sentence | denotes | Deep tendon reflexes were generally absent and there were no signs of upper motor neuron disorder. |
| T39 | 1374-1522 | Sentence | denotes | There was a reduction in the vibration of the knees from 2/8 in the 128 Hz tuning fork test, and fine touch sensation was bilateral stocking shaped. |
| T40 | 1523-1556 | Sentence | denotes | There was no spine sensory level. |
| T41 | 1557-1636 | Sentence | denotes | Meningeal irritation signs and upper motor neuron disorder signs were negative. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T43 | 61-69 | UBERON:0001637 | denotes | arterial |
| T44 | 157-162 | UBERON:0002048 | denotes | cough |
| T45 | 221-229 | SP_7 | denotes | COVID-19 |
| T46 | 240-250 | SP_7 | denotes | SARS-CoV-2 |
| T47 | 261-275 | UBERON:0001728 | denotes | nasopharyngeal |
| T48 | 386-392 | NCBITaxon:9606 | denotes | person |
| T49 | 492-497 | UBERON:0002101 | denotes | limbs |
| T50 | 552-562 | UBERON:0009552 | denotes | fingertips |
| T51 | 567-571 | UBERON:0002544 | denotes | toes |
| T52 | 655-667 | UBERON:0001016 | denotes | neurological |
| T53 | 733-738 | UBERON:0000178 | denotes | blood |
| T54 | 764-769 | UBERON:0000948 | denotes | heart |
| T55 | 793-804 | UBERON:0001004 | denotes | respiratory |
| T56 | 936-948 | UBERON:0001016 | denotes | neurological |
| T57 | 971-980 | UBERON:0010743 | denotes | meningeal |
| T58 | 1022-1035 | UBERON:0001785 | denotes | cranial nerve |
| T59 | 1099-1104 | UBERON:0002101 | denotes | limbs |
| T60 | 1191-1208 | UBERON:0002102 | denotes | upper extremities |
| T61 | 1262-1273 | UBERON:0003632 | denotes | extremities |
| T62 | 1280-1286 | UBERON:0000043 | denotes | tendon |
| T63 | 1287-1295 | GO:0060004 | denotes | reflexes |
| T64 | 1351-1363 | CL:0000100 | denotes | motor neuron |
| T65 | 1420-1425 | UBERON:0001465 | denotes | knees |
| T66 | 1456-1460 | GO:0005657 | denotes | fork |
| T67 | 1476-1481 | GO:0050975 | denotes | touch |
| T68 | 1536-1541 | UBERON:0001130 | denotes | spine |
| T69 | 1557-1566 | UBERON:0010743 | denotes | Meningeal |
| T70 | 1594-1606 | CL:0000100 | denotes | motor neuron |