PMC:7405836 / 53764-54786 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7405836","sourcedb":"PMC","sourceid":"7405836","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7405836","text":"Swine acute diarrhea syndrome coronavirus (SADS-CoV) was first identified in suckling piglets having severe enteritis and belongs to the genus Alphacoronavirus (106). The outbreak was associated with considerable scale mortality of piglets (24,693 deaths) across four farms in China (134). The virus isolated from the piglets was almost identical to and had 95% genomic similarity with horseshoe bat (Rhinolophus species) coronavirus HKU2, suggesting a bat origin of the pig virus (106, 134, 135). It is also imperative to note that the SADS-CoV outbreak started in Guangdong province, near the location of the SARS pandemic origin (134). Before this outbreak, pigs were not known to be infected with bat-origin coronaviruses. This indicates that the bat-origin coronavirus jumped to pig by breaking the species barrier. The next step of this jump might not end well, since pigs are considered the mixing vessel for influenza A viruses due to their ability to be infected by both human and avian influenza A viruses (136).","tracks":[{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T52","span":{"begin":213,"end":218},"obj":"Body_part"},{"id":"T53","span":{"begin":905,"end":911},"obj":"Body_part"}],"attributes":[{"id":"A52","pred":"uberon_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/UBERON_0002542"},{"id":"A53","pred":"uberon_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/UBERON_0000055"},{"subj":"T52","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T53","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T58","span":{"begin":12,"end":20},"obj":"Phenotype"}],"attributes":[{"id":"A58","pred":"hp_id","subj":"T58","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"subj":"T58","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T505","span":{"begin":6,"end":20},"obj":"Disease"},{"id":"T506","span":{"begin":12,"end":20},"obj":"Disease"},{"id":"T507","span":{"begin":43,"end":47},"obj":"Disease"},{"id":"T509","span":{"begin":108,"end":117},"obj":"Disease"},{"id":"T510","span":{"begin":537,"end":541},"obj":"Disease"},{"id":"T512","span":{"begin":611,"end":615},"obj":"Disease"},{"id":"T513","span":{"begin":916,"end":925},"obj":"Disease"},{"id":"T514","span":{"begin":990,"end":1005},"obj":"Disease"},{"id":"T515","span":{"begin":996,"end":1005},"obj":"Disease"}],"attributes":[{"id":"A505","pred":"mondo_id","subj":"T505","obj":"http://purl.obolibrary.org/obo/MONDO_0000257"},{"id":"A506","pred":"mondo_id","subj":"T506","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A507","pred":"mondo_id","subj":"T507","obj":"http://purl.obolibrary.org/obo/MONDO_0000694"},{"id":"A508","pred":"mondo_id","subj":"T507","obj":"http://purl.obolibrary.org/obo/MONDO_0054866"},{"id":"A509","pred":"mondo_id","subj":"T509","obj":"http://purl.obolibrary.org/obo/MONDO_0043579"},{"id":"A510","pred":"mondo_id","subj":"T510","obj":"http://purl.obolibrary.org/obo/MONDO_0000694"},{"id":"A511","pred":"mondo_id","subj":"T510","obj":"http://purl.obolibrary.org/obo/MONDO_0054866"},{"id":"A512","pred":"mondo_id","subj":"T512","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A513","pred":"mondo_id","subj":"T513","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"id":"A514","pred":"mondo_id","subj":"T514","obj":"http://purl.obolibrary.org/obo/MONDO_0018695"},{"id":"A515","pred":"mondo_id","subj":"T515","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"},{"subj":"T505","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T506","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T507","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T509","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T510","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T512","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T513","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T514","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T515","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T526","span":{"begin":294,"end":299},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T527","span":{"begin":396,"end":399},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T528","span":{"begin":451,"end":452},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T529","span":{"begin":453,"end":456},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T530","span":{"begin":475,"end":480},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T531","span":{"begin":701,"end":704},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T532","span":{"begin":751,"end":754},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9397"},{"id":"T533","span":{"begin":905,"end":911},"obj":"http://purl.obolibrary.org/obo/UBERON_0000055"},{"id":"T534","span":{"begin":926,"end":927},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T535","span":{"begin":928,"end":935},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T536","span":{"begin":980,"end":985},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T537","span":{"begin":1006,"end":1007},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T538","span":{"begin":1008,"end":1015},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"}],"attributes":[{"subj":"T526","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T527","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T528","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T529","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T530","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T531","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T532","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T533","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T534","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T535","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T536","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T537","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T538","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T361","span":{"begin":0,"end":166},"obj":"Sentence"},{"id":"T362","span":{"begin":167,"end":289},"obj":"Sentence"},{"id":"T363","span":{"begin":290,"end":497},"obj":"Sentence"},{"id":"T364","span":{"begin":498,"end":638},"obj":"Sentence"},{"id":"T365","span":{"begin":639,"end":726},"obj":"Sentence"},{"id":"T366","span":{"begin":727,"end":820},"obj":"Sentence"},{"id":"T367","span":{"begin":821,"end":1022},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T361","pred":"source","obj":"LitCovid-sentences"},{"subj":"T362","pred":"source","obj":"LitCovid-sentences"},{"subj":"T363","pred":"source","obj":"LitCovid-sentences"},{"subj":"T364","pred":"source","obj":"LitCovid-sentences"},{"subj":"T365","pred":"source","obj":"LitCovid-sentences"},{"subj":"T366","pred":"source","obj":"LitCovid-sentences"},{"subj":"T367","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"1651","span":{"begin":751,"end":754},"obj":"Gene"},{"id":"1652","span":{"begin":701,"end":704},"obj":"Gene"},{"id":"1653","span":{"begin":453,"end":456},"obj":"Gene"},{"id":"1654","span":{"begin":396,"end":399},"obj":"Gene"},{"id":"1655","span":{"begin":0,"end":41},"obj":"Species"},{"id":"1656","span":{"begin":422,"end":433},"obj":"Species"},{"id":"1657","span":{"begin":471,"end":474},"obj":"Species"},{"id":"1658","span":{"begin":661,"end":665},"obj":"Species"},{"id":"1659","span":{"begin":712,"end":725},"obj":"Species"},{"id":"1660","span":{"begin":762,"end":773},"obj":"Species"},{"id":"1661","span":{"begin":784,"end":787},"obj":"Species"},{"id":"1662","span":{"begin":874,"end":878},"obj":"Species"},{"id":"1663","span":{"begin":980,"end":985},"obj":"Species"},{"id":"1664","span":{"begin":401,"end":412},"obj":"Species"},{"id":"1665","span":{"begin":916,"end":925},"obj":"Species"},{"id":"1666","span":{"begin":996,"end":1005},"obj":"Species"},{"id":"1667","span":{"begin":277,"end":282},"obj":"Species"},{"id":"1668","span":{"begin":434,"end":438},"obj":"Species"},{"id":"1669","span":{"begin":43,"end":51},"obj":"Species"},{"id":"1670","span":{"begin":537,"end":545},"obj":"Species"},{"id":"1671","span":{"begin":108,"end":117},"obj":"Disease"},{"id":"1672","span":{"begin":219,"end":228},"obj":"Disease"},{"id":"1673","span":{"begin":248,"end":254},"obj":"Disease"},{"id":"1674","span":{"begin":687,"end":695},"obj":"Disease"},{"id":"1675","span":{"begin":963,"end":971},"obj":"Disease"}],"attributes":[{"id":"A1651","pred":"tao:has_database_id","subj":"1651","obj":"Gene:570"},{"id":"A1652","pred":"tao:has_database_id","subj":"1652","obj":"Gene:570"},{"id":"A1653","pred":"tao:has_database_id","subj":"1653","obj":"Gene:570"},{"id":"A1654","pred":"tao:has_database_id","subj":"1654","obj":"Gene:570"},{"id":"A1655","pred":"tao:has_database_id","subj":"1655","obj":"Tax:2032731"},{"id":"A1656","pred":"tao:has_database_id","subj":"1656","obj":"Tax:11118"},{"id":"A1657","pred":"tao:has_database_id","subj":"1657","obj":"Tax:9823"},{"id":"A1658","pred":"tao:has_database_id","subj":"1658","obj":"Tax:9823"},{"id":"A1659","pred":"tao:has_database_id","subj":"1659","obj":"Tax:11118"},{"id":"A1660","pred":"tao:has_database_id","subj":"1660","obj":"Tax:11118"},{"id":"A1661","pred":"tao:has_database_id","subj":"1661","obj":"Tax:9823"},{"id":"A1662","pred":"tao:has_database_id","subj":"1662","obj":"Tax:9823"},{"id":"A1663","pred":"tao:has_database_id","subj":"1663","obj":"Tax:9606"},{"id":"A1664","pred":"tao:has_database_id","subj":"1664","obj":"Tax:693998"},{"id":"A1665","pred":"tao:has_database_id","subj":"1665","obj":"Tax:11309"},{"id":"A1666","pred":"tao:has_database_id","subj":"1666","obj":"Tax:11309"},{"id":"A1667","pred":"tao:has_database_id","subj":"1667","obj":"Tax:998089"},{"id":"A1668","pred":"tao:has_database_id","subj":"1668","obj":"Tax:693998"},{"id":"A1669","pred":"tao:has_database_id","subj":"1669","obj":"Tax:2032731"},{"id":"A1670","pred":"tao:has_database_id","subj":"1670","obj":"Tax:2032731"},{"id":"A1671","pred":"tao:has_database_id","subj":"1671","obj":"MESH:D004751"},{"id":"A1672","pred":"tao:has_database_id","subj":"1672","obj":"MESH:D003643"},{"id":"A1673","pred":"tao:has_database_id","subj":"1673","obj":"MESH:D003643"},{"id":"A1674","pred":"tao:has_database_id","subj":"1674","obj":"MESH:D007239"},{"id":"A1675","pred":"tao:has_database_id","subj":"1675","obj":"MESH:D007239"},{"subj":"1651","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1652","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1653","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1654","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1655","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1656","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1657","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1658","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1659","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1660","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1661","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1662","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1663","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1664","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1665","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1666","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1667","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1668","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1669","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1670","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1671","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1672","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1673","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1674","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1675","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-UBERON","color":"#eccf93","default":true},{"id":"LitCovid-PD-HP","color":"#b593ec"},{"id":"LitCovid-PD-MONDO","color":"#93ec9b"},{"id":"LitCovid-PD-CLO","color":"#ec93a4"},{"id":"LitCovid-sentences","color":"#93beec"},{"id":"LitCovid-PubTator","color":"#d8ec93"}]}]}}