PMC:7402624 / 72751-73089 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T550","span":{"begin":32,"end":36},"obj":"Body_part"},{"id":"T551","span":{"begin":116,"end":120},"obj":"Body_part"}],"attributes":[{"id":"A550","pred":"fma_id","subj":"T550","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A551","pred":"fma_id","subj":"T551","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"To group individuals based on B cell landscape, pairwise Earth Mover’s Distance (EMD) value was calculated on the B cell tSNE axes for all COVID-19 day 0 patients, healthy donors, and recovered donors using the emdist package in R as previously described (60). Resulting scores were hierarchically clustered using the hclust package in R."}

{"project":"LitCovid-PubTator","denotations":[{"id":"2159","span":{"begin":63,"end":68},"obj":"Gene"},{"id":"2160","span":{"begin":154,"end":162},"obj":"Species"},{"id":"2161","span":{"begin":139,"end":147},"obj":"Disease"}],"attributes":[{"id":"A2159","pred":"tao:has_database_id","subj":"2159","obj":"Gene:127262"},{"id":"A2160","pred":"tao:has_database_id","subj":"2160","obj":"Tax:9606"},{"id":"A2161","pred":"tao:has_database_id","subj":"2161","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"To group individuals based on B cell landscape, pairwise Earth Mover’s Distance (EMD) value was calculated on the B cell tSNE axes for all COVID-19 day 0 patients, healthy donors, and recovered donors using the emdist package in R as previously described (60). Resulting scores were hierarchically clustered using the hclust package in R."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T437","span":{"begin":139,"end":147},"obj":"Disease"}],"attributes":[{"id":"A437","pred":"mondo_id","subj":"T437","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"To group individuals based on B cell landscape, pairwise Earth Mover’s Distance (EMD) value was calculated on the B cell tSNE axes for all COVID-19 day 0 patients, healthy donors, and recovered donors using the emdist package in R as previously described (60). Resulting scores were hierarchically clustered using the hclust package in R."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1047","span":{"begin":30,"end":36},"obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"T1048","span":{"begin":114,"end":120},"obj":"http://purl.obolibrary.org/obo/CL_0000236"}],"text":"To group individuals based on B cell landscape, pairwise Earth Mover’s Distance (EMD) value was calculated on the B cell tSNE axes for all COVID-19 day 0 patients, healthy donors, and recovered donors using the emdist package in R as previously described (60). Resulting scores were hierarchically clustered using the hclust package in R."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T12732","span":{"begin":3,"end":8},"obj":"Chemical"}],"attributes":[{"id":"A96953","pred":"chebi_id","subj":"T12732","obj":"http://purl.obolibrary.org/obo/CHEBI_24433"}],"text":"To group individuals based on B cell landscape, pairwise Earth Mover’s Distance (EMD) value was calculated on the B cell tSNE axes for all COVID-19 day 0 patients, healthy donors, and recovered donors using the emdist package in R as previously described (60). Resulting scores were hierarchically clustered using the hclust package in R."}

{"project":"LitCovid-sentences","denotations":[{"id":"T450","span":{"begin":0,"end":260},"obj":"Sentence"},{"id":"T451","span":{"begin":261,"end":338},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To group individuals based on B cell landscape, pairwise Earth Mover’s Distance (EMD) value was calculated on the B cell tSNE axes for all COVID-19 day 0 patients, healthy donors, and recovered donors using the emdist package in R as previously described (60). Resulting scores were hierarchically clustered using the hclust package in R."}

{"project":"2_test","denotations":[{"id":"32669297-30413431-135105236","span":{"begin":256,"end":258},"obj":"30413431"}],"text":"To group individuals based on B cell landscape, pairwise Earth Mover’s Distance (EMD) value was calculated on the B cell tSNE axes for all COVID-19 day 0 patients, healthy donors, and recovered donors using the emdist package in R as previously described (60). Resulting scores were hierarchically clustered using the hclust package in R."}