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PMC:7402624 / 5755-6926 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T32 585-590 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T33 647-657 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
147 37-44 Species denotes patient Tax:9606
167 575-578 Gene denotes CD4 Gene:920
168 579-582 Gene denotes CD8 Gene:925
169 620-623 Gene denotes CD4 Gene:920
170 624-627 Gene denotes CD8 Gene:925
171 136-143 Species denotes patient Tax:9606
172 229-237 Species denotes patients Tax:9606
173 297-305 Species denotes patients Tax:9606
174 330-337 Species denotes patient Tax:9606
175 467-475 Species denotes patients Tax:9606
176 668-675 Species denotes patient Tax:9606
177 1030-1037 Species denotes patient Tax:9606
178 188-190 Disease denotes HD MESH:D006816
179 220-228 Disease denotes COVID-19 MESH:C000657245
180 288-296 Disease denotes COVID-19 MESH:C000657245
181 321-329 Disease denotes COVID-19 MESH:C000657245
182 458-466 Disease denotes COVID-19 MESH:C000657245
183 776-778 Disease denotes HD MESH:D006816
184 848-859 Disease denotes lymphopenia MESH:D008231
185 1021-1029 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T45 188-190 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T46 211-213 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T47 220-228 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 288-296 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 321-329 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 458-466 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T51 776-778 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T52 848-859 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T53 1007-1009 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T54 1021-1029 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 1100-1102 Disease denotes BH http://purl.obolibrary.org/obo/MONDO_0010873

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T60 121-122 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T61 211-213 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T62 240-241 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T63 319-320 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 575-578 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T65 579-582 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T66 583-590 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T67 620-623 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T68 624-627 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T69 1007-1009 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T70 1090-1094 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T14 188-190 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T15 211-213 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T16 347-352 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T17 776-778 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T18 992-997 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T19 1007-1009 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 848-859 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T41 0-119 Sentence denotes Fig. 1 Clinical characterization of patient cohorts, inflammatory markers, and quantification of major immune subsets.
T42 120-306 Sentence denotes (A) Overview of patient cohorts in study, including healthy donors (HD), recovered donors (RD), and COVID-19 patients. (B) Quantification of key clinical parameters in COVID-19 patients.
T43 307-676 Sentence denotes Each dot is a COVID-19 patient; Healthy donor range indicated in green. (C) Spearman correlation and hierarchical clustering of indicated features for COVID-19 patients. (D) Representative flow cytometry plots and (E) frequencies of major immune subsets. (F) Ratio of CD4:CD8 T cells. (G) Spearman correlation of CD4:CD8 ratio and clinical lymphocyte count per patient.
T44 677-793 Sentence denotes Dark and light gray shaded regions represent clinical normal range and normal range based on study HD, respectively.
T45 794-1044 Sentence denotes Vertical dashed line indicates clinical threshold for lymphopenia. (H) Spearman correlations of indicated subsets with various clinical features. (E and F) Each dot represents an individual healthy donor (green), RD (blue), or COVID-19 patient (red).
T46 1045-1171 Sentence denotes Significance determined by unpaired Wilcoxon test with BH correction: *p < 0.05, **p < 0.01, ***p < 0.001, and ****p < 0.0001.