PMC:7402624 / 50706-51122 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7402624","sourcedb":"PMC","sourceid":"7402624","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7402624","text":"UMAP Component 1 captured an immunotype (Immunotype 1) that was characterized by effector or highly activated CD4 T cells, low cTfh, some CD8 TEMRA-like activation, possibly hyperactivated CD8 T cells, and Tbet+ PB, whereas Component 2 or Immunotype 2 captured Tbetbright effector-like CD8 T cells, lacked some of the robust CD4 T cell activation but has some features of proliferating B cells (Fig. 6G and fig. S8).","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T430","span":{"begin":116,"end":121},"obj":"Body_part"},{"id":"T431","span":{"begin":195,"end":200},"obj":"Body_part"},{"id":"T432","span":{"begin":212,"end":214},"obj":"Body_part"},{"id":"T433","span":{"begin":292,"end":297},"obj":"Body_part"},{"id":"T434","span":{"begin":331,"end":335},"obj":"Body_part"},{"id":"T435","span":{"begin":388,"end":393},"obj":"Body_part"}],"attributes":[{"id":"A430","pred":"fma_id","subj":"T430","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A431","pred":"fma_id","subj":"T431","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A432","pred":"fma_id","subj":"T432","obj":"http://purl.org/sig/ont/fma/fma84371"},{"id":"A433","pred":"fma_id","subj":"T433","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A434","pred":"fma_id","subj":"T434","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A435","pred":"fma_id","subj":"T435","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T430","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T431","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T432","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T433","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T434","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T435","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"1677","span":{"begin":110,"end":113},"obj":"Gene"},{"id":"1678","span":{"begin":138,"end":141},"obj":"Gene"},{"id":"1679","span":{"begin":189,"end":192},"obj":"Gene"},{"id":"1680","span":{"begin":206,"end":210},"obj":"Gene"},{"id":"1681","span":{"begin":286,"end":289},"obj":"Gene"},{"id":"1682","span":{"begin":325,"end":328},"obj":"Gene"}],"attributes":[{"id":"A1677","pred":"tao:has_database_id","subj":"1677","obj":"Gene:920"},{"id":"A1678","pred":"tao:has_database_id","subj":"1678","obj":"Gene:925"},{"id":"A1679","pred":"tao:has_database_id","subj":"1679","obj":"Gene:925"},{"id":"A1680","pred":"tao:has_database_id","subj":"1680","obj":"Gene:30009"},{"id":"A1681","pred":"tao:has_database_id","subj":"1681","obj":"Gene:925"},{"id":"A1682","pred":"tao:has_database_id","subj":"1682","obj":"Gene:920"},{"subj":"1677","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1678","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1679","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1680","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1681","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1682","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T348","span":{"begin":212,"end":214},"obj":"Disease"}],"attributes":[{"id":"A348","pred":"mondo_id","subj":"T348","obj":"http://purl.obolibrary.org/obo/MONDO_0019035"},{"subj":"T348","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T784","span":{"begin":100,"end":109},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T785","span":{"begin":110,"end":113},"obj":"http://purl.obolibrary.org/obo/PR_000001004"},{"id":"T786","span":{"begin":114,"end":121},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T787","span":{"begin":138,"end":141},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T788","span":{"begin":153,"end":163},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T789","span":{"begin":189,"end":192},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T790","span":{"begin":193,"end":200},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T791","span":{"begin":286,"end":289},"obj":"http://purl.obolibrary.org/obo/CLO_0053438"},{"id":"T792","span":{"begin":290,"end":297},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T793","span":{"begin":325,"end":328},"obj":"http://purl.obolibrary.org/obo/PR_000001004"},{"id":"T794","span":{"begin":329,"end":335},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T795","span":{"begin":336,"end":346},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T796","span":{"begin":351,"end":354},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T797","span":{"begin":386,"end":393},"obj":"http://purl.obolibrary.org/obo/CL_0000236"}],"attributes":[{"subj":"T784","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T785","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T786","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T787","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T788","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T789","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T790","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T791","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T792","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T793","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T794","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T795","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T796","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T797","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T6","span":{"begin":81,"end":89},"obj":"Chemical"},{"id":"T44700","span":{"begin":212,"end":214},"obj":"Chemical"},{"id":"T9","span":{"begin":272,"end":280},"obj":"Chemical"},{"id":"T18190","span":{"begin":412,"end":414},"obj":"Chemical"}],"attributes":[{"id":"A23826","pred":"chebi_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CHEBI_35224"},{"id":"A87652","pred":"chebi_id","subj":"T44700","obj":"http://purl.obolibrary.org/obo/CHEBI_53319"},{"id":"A42375","pred":"chebi_id","subj":"T44700","obj":"http://purl.obolibrary.org/obo/CHEBI_60686"},{"id":"A41212","pred":"chebi_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/CHEBI_35224"},{"id":"A35884","pred":"chebi_id","subj":"T18190","obj":"http://purl.obolibrary.org/obo/CHEBI_29385"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T44700","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T18190","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T93","span":{"begin":329,"end":346},"obj":"http://purl.obolibrary.org/obo/GO_0042110"},{"id":"T94","span":{"begin":331,"end":346},"obj":"http://purl.obolibrary.org/obo/GO_0001775"}],"attributes":[{"subj":"T93","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T94","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T292","span":{"begin":0,"end":416},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T292","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93e9ec","default":true},{"id":"LitCovid-PubTator","color":"#ecd593"},{"id":"LitCovid-PD-MONDO","color":"#bb93ec"},{"id":"LitCovid-PD-CLO","color":"#93eca0"},{"id":"LitCovid-PD-CHEBI","color":"#ec939f"},{"id":"LitCovid-PD-GO-BP","color":"#93b9ec"},{"id":"LitCovid-sentences","color":"#d3ec93"}]}]}}