PMC:7402624 / 50706-51122
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T430 | 116-121 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T431 | 195-200 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T432 | 212-214 | Body_part | denotes | PB | http://purl.org/sig/ont/fma/fma84371 |
| T433 | 292-297 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T434 | 331-335 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T435 | 388-393 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1677 | 110-113 | Gene | denotes | CD4 | Gene:920 |
| 1678 | 138-141 | Gene | denotes | CD8 | Gene:925 |
| 1679 | 189-192 | Gene | denotes | CD8 | Gene:925 |
| 1680 | 206-210 | Gene | denotes | Tbet | Gene:30009 |
| 1681 | 286-289 | Gene | denotes | CD8 | Gene:925 |
| 1682 | 325-328 | Gene | denotes | CD4 | Gene:920 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T348 | 212-214 | Disease | denotes | PB | http://purl.obolibrary.org/obo/MONDO_0019035 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T784 | 100-109 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activated |
| T785 | 110-113 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T786 | 114-121 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T787 | 138-141 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T788 | 153-163 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T789 | 189-192 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T790 | 193-200 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T791 | 286-289 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
| T792 | 290-297 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
| T793 | 325-328 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T794 | 329-335 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T795 | 336-346 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T796 | 351-354 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T797 | 386-393 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cells |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T6 | 81-89 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T44700 | 212-214 | Chemical | denotes | PB | http://purl.obolibrary.org/obo/CHEBI_53319|http://purl.obolibrary.org/obo/CHEBI_60686 |
| T9 | 272-280 | Chemical | denotes | effector | http://purl.obolibrary.org/obo/CHEBI_35224 |
| T18190 | 412-414 | Chemical | denotes | S8 | http://purl.obolibrary.org/obo/CHEBI_29385 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T93 | 329-346 | http://purl.obolibrary.org/obo/GO_0042110 | denotes | T cell activation |
| T94 | 331-346 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T292 | 0-416 | Sentence | denotes | UMAP Component 1 captured an immunotype (Immunotype 1) that was characterized by effector or highly activated CD4 T cells, low cTfh, some CD8 TEMRA-like activation, possibly hyperactivated CD8 T cells, and Tbet+ PB, whereas Component 2 or Immunotype 2 captured Tbetbright effector-like CD8 T cells, lacked some of the robust CD4 T cell activation but has some features of proliferating B cells (Fig. 6G and fig. S8). |