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PMC:7402624 / 35599-36502 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T327 122-127 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T328 145-150 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T329 158-163 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T330 194-199 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T331 292-295 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T332 311-316 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T333 332-335 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T334 351-356 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T335 684-687 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T336 703-708 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1291 116-119 Gene denotes CD8 Gene:925
1292 139-142 Gene denotes CD4 Gene:920
1293 299-303 Gene denotes CD38 Gene:952
1294 305-308 Gene denotes CD4 Gene:920
1295 339-343 Gene denotes CD38 Gene:952
1296 345-348 Gene denotes CD8 Gene:925
1297 691-695 Gene denotes CD38 Gene:952
1298 697-700 Gene denotes CD4 Gene:920
1299 214-222 Species denotes patients Tax:9606
1300 453-461 Species denotes patients Tax:9606
1301 732-740 Species denotes patients Tax:9606
1302 365-368 Chemical denotes PBs MESH:D007854
1303 716-719 Chemical denotes PBs MESH:D007854
1304 205-213 Disease denotes COVID-19 MESH:C000657245
1305 401-403 Disease denotes HD MESH:D006816
1306 444-452 Disease denotes COVID-19 MESH:C000657245
1307 723-731 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T285 205-213 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T286 401-403 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T287 430-432 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T288 444-452 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T289 723-731 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T596 76-77 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T597 116-119 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T598 120-127 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T599 133-150 http://purl.obolibrary.org/obo/CL_0000895 denotes naïve CD4 T cells
T600 156-163 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells
T601 194-199 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T602 279-280 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T603 299-303 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T604 305-308 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T605 309-316 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T606 339-343 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T607 345-348 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T608 349-356 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T609 430-432 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T610 578-582 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T611 691-695 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T612 697-700 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T613 701-708 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T257 296-298 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T258 336-338 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T259 394-399 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T260 401-403 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T261 423-428 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T262 430-432 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T263 688-690 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T78 31-47 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T207 75-262 Sentence denotes (A) Global viSNE projection of non-naïve CD8 T cells, non-naïve CD4 T cells, and B cells for all subjects pooled, with cells from COVID-19 patients at D0 and D7 concatenated and overlaid.
T208 263-534 Sentence denotes Frequencies of (B) KI67+ and HLA-DR+CD38+ CD4 T cells, (C) KI67+ and HLA-DR+CD38+ CD8 T cells, or (D) PBs as indicated for healthy donor (HD; green), recovered donor (RD; blue), or COVID-19 patients (red) with paired samples at D0 and D7 indicated by the connecting line.
T209 535-640 Sentence denotes Significance determined by paired Wilcoxon test: *p < 0.05, **p < 0.01, ***p < 0.001, and ****p < 0.0001.
T210 641-903 Sentence denotes Longitudinal patterns (see Methods) of (E) HLA-DR+CD38+ CD4 T cells or (F) PBs in COVID-19 patients shown as frequency and representative flow cytometry plots. (G) Spearman correlations of clinical parameters with longitudinal fold changes in immune populations.