PMC:7402624 / 34777-35590
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T314 | 151-155 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T315 | 163-167 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T316 | 175-179 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T317 | 421-425 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T318 | 433-437 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T319 | 445-449 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T320 | 544-561 | Body_part | denotes | cells, the region | http://purl.org/sig/ont/fma/fma85545 |
T321 | 544-549 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T322 | 574-577 | Body_part | denotes | map | http://purl.org/sig/ont/fma/fma67847 |
T323 | 604-607 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
T324 | 618-622 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T325 | 758-762 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T326 | 769-773 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
1261 | 145-148 | Gene | denotes | CD8 | Gene:925 |
1262 | 157-160 | Gene | denotes | CD4 | Gene:920 |
1263 | 427-430 | Gene | denotes | CD4 | Gene:920 |
1264 | 538-541 | Gene | denotes | CD8 | Gene:925 |
1265 | 599-603 | Gene | denotes | CD38 | Gene:952 |
1266 | 612-615 | Gene | denotes | CD8 | Gene:925 |
1267 | 752-755 | Gene | denotes | CD4 | Gene:920 |
1268 | 415-418 | Gene | denotes | CD8 | Gene:925 |
1269 | 41-49 | Species | denotes | patients | Tax:9606 |
1270 | 327-335 | Species | denotes | patients | Tax:9606 |
1271 | 665-673 | Species | denotes | patients | Tax:9606 |
1272 | 32-40 | Disease | denotes | COVID-19 | MESH:C000657245 |
1273 | 656-664 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T283 | 32-40 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T284 | 656-664 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T575 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T576 | 145-148 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
T577 | 149-155 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
T578 | 157-160 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
T579 | 161-167 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
T580 | 173-179 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cell |
T581 | 415-418 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
T582 | 419-425 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
T583 | 427-430 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
T584 | 431-437 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
T585 | 443-449 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cell |
T586 | 538-541 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
T587 | 542-549 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cells |
T588 | 599-603 | http://purl.obolibrary.org/obo/PR_000001408 | denotes | CD38 |
T589 | 612-615 | http://purl.obolibrary.org/obo/CLO_0053438 | denotes | CD8 |
T590 | 616-622 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
T591 | 720-721 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T592 | 752-755 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
T593 | 756-762 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
T594 | 767-773 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B cell |
T595 | 774-784 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T256 | 608-610 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T73 | 57-73 | http://purl.obolibrary.org/obo/GO_0006955 | denotes | immune responses |
T74 | 173-195 | http://purl.obolibrary.org/obo/GO_0030183 | denotes | B cell differentiation |
T75 | 175-195 | http://purl.obolibrary.org/obo/GO_0030154 | denotes | cell differentiation |
T76 | 767-784 | http://purl.obolibrary.org/obo/GO_0042113 | denotes | B cell activation |
T77 | 769-784 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T201 | 0-91 | Sentence | denotes | A key question for hospitalized COVID-19 patients is how immune responses change over time. |
T202 | 92-303 | Sentence | denotes | Thus, we used the global tSNE projections of overall CD8 T cell, CD4 T cell, and B cell differentiation states to interrogate temporal changes in these populations between D0 and D7 of hospitalization (Fig. 5A). |
T203 | 304-520 | Sentence | denotes | Combining data for all patients revealed considerable stability of the tSNE distributions between D0 and D7 in CD8 T cell, CD4 T cell, and B cell populations, particularly for key regions of interest discussed above. |
T204 | 521-719 | Sentence | denotes | For example, for CD8 T cells, the region of the tSNE map containing KI67+ and CD38+HLA-DR+ CD8 T cell populations that was enriched in COVID-19 patients at D0 (Fig. 2) was preserved at D7 (Fig. 5A). |
T205 | 720-813 | Sentence | denotes | A similar temporal stability of CD4 T cell and B cell activation was also observed (Fig. 5A). |