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PMC:7402624 / 34777-35590 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T314 151-155 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T315 163-167 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T316 175-179 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T317 421-425 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T318 433-437 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T319 445-449 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T320 544-561 Body_part denotes cells, the region http://purl.org/sig/ont/fma/fma85545
T321 544-549 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T322 574-577 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T323 604-607 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T324 618-622 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T325 758-762 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T326 769-773 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1261 145-148 Gene denotes CD8 Gene:925
1262 157-160 Gene denotes CD4 Gene:920
1263 427-430 Gene denotes CD4 Gene:920
1264 538-541 Gene denotes CD8 Gene:925
1265 599-603 Gene denotes CD38 Gene:952
1266 612-615 Gene denotes CD8 Gene:925
1267 752-755 Gene denotes CD4 Gene:920
1268 415-418 Gene denotes CD8 Gene:925
1269 41-49 Species denotes patients Tax:9606
1270 327-335 Species denotes patients Tax:9606
1271 665-673 Species denotes patients Tax:9606
1272 32-40 Disease denotes COVID-19 MESH:C000657245
1273 656-664 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T283 32-40 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T284 656-664 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T575 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T576 145-148 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T577 149-155 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T578 157-160 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T579 161-167 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T580 173-179 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T581 415-418 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T582 419-425 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T583 427-430 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T584 431-437 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T585 443-449 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T586 538-541 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T587 542-549 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T588 599-603 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T589 612-615 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T590 616-622 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T591 720-721 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T592 752-755 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T593 756-762 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T594 767-773 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T595 774-784 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T256 608-610 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T73 57-73 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses
T74 173-195 http://purl.obolibrary.org/obo/GO_0030183 denotes B cell differentiation
T75 175-195 http://purl.obolibrary.org/obo/GO_0030154 denotes cell differentiation
T76 767-784 http://purl.obolibrary.org/obo/GO_0042113 denotes B cell activation
T77 769-784 http://purl.obolibrary.org/obo/GO_0001775 denotes cell activation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T201 0-91 Sentence denotes A key question for hospitalized COVID-19 patients is how immune responses change over time.
T202 92-303 Sentence denotes Thus, we used the global tSNE projections of overall CD8 T cell, CD4 T cell, and B cell differentiation states to interrogate temporal changes in these populations between D0 and D7 of hospitalization (Fig. 5A).
T203 304-520 Sentence denotes Combining data for all patients revealed considerable stability of the tSNE distributions between D0 and D7 in CD8 T cell, CD4 T cell, and B cell populations, particularly for key regions of interest discussed above.
T204 521-719 Sentence denotes For example, for CD8 T cells, the region of the tSNE map containing KI67+ and CD38+HLA-DR+ CD8 T cell populations that was enriched in COVID-19 patients at D0 (Fig. 2) was preserved at D7 (Fig. 5A).
T205 720-813 Sentence denotes A similar temporal stability of CD4 T cell and B cell activation was also observed (Fig. 5A).