PMC:7402624 / 23557-23841 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T186","span":{"begin":140,"end":143},"obj":"Body_part"},{"id":"T187","span":{"begin":246,"end":251},"obj":"Body_part"}],"attributes":[{"id":"A186","pred":"fma_id","subj":"T186","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A187","pred":"fma_id","subj":"T187","obj":"http://purl.org/sig/ont/fma/fma68646"}],"text":"This analysis identified an increase in Clusters 13 and 14 in COVID-19 patients compared to HD and RD that represent populations expressing HLA-DR, CD38, PD1, KI67 and CD95, as well as Cluster 15 that contained Tbet+CX3CR1+ “effector-like” CD4 T cells (Fig. 3, I and J, and fig. S3G)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"835","span":{"begin":148,"end":152},"obj":"Gene"},{"id":"836","span":{"begin":154,"end":157},"obj":"Gene"},{"id":"837","span":{"begin":168,"end":172},"obj":"Gene"},{"id":"838","span":{"begin":211,"end":215},"obj":"Gene"},{"id":"839","span":{"begin":216,"end":222},"obj":"Gene"},{"id":"840","span":{"begin":240,"end":243},"obj":"Gene"},{"id":"843","span":{"begin":71,"end":79},"obj":"Species"},{"id":"845","span":{"begin":185,"end":192},"obj":"Species"},{"id":"851","span":{"begin":62,"end":70},"obj":"Disease"},{"id":"852","span":{"begin":92,"end":94},"obj":"Disease"}],"attributes":[{"id":"A835","pred":"tao:has_database_id","subj":"835","obj":"Gene:952"},{"id":"A836","pred":"tao:has_database_id","subj":"836","obj":"Gene:6622"},{"id":"A837","pred":"tao:has_database_id","subj":"837","obj":"Gene:355"},{"id":"A838","pred":"tao:has_database_id","subj":"838","obj":"Gene:30009"},{"id":"A839","pred":"tao:has_database_id","subj":"839","obj":"Gene:1524"},{"id":"A840","pred":"tao:has_database_id","subj":"840","obj":"Gene:920"},{"id":"A843","pred":"tao:has_database_id","subj":"843","obj":"Tax:9606"},{"id":"A845","pred":"tao:has_database_id","subj":"845","obj":"Tax:100569"},{"id":"A851","pred":"tao:has_database_id","subj":"851","obj":"MESH:C000657245"},{"id":"A852","pred":"tao:has_database_id","subj":"852","obj":"MESH:D006816"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"This analysis identified an increase in Clusters 13 and 14 in COVID-19 patients compared to HD and RD that represent populations expressing HLA-DR, CD38, PD1, KI67 and CD95, as well as Cluster 15 that contained Tbet+CX3CR1+ “effector-like” CD4 T cells (Fig. 3, I and J, and fig. S3G)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T170","span":{"begin":62,"end":70},"obj":"Disease"},{"id":"T171","span":{"begin":92,"end":94},"obj":"Disease"},{"id":"T172","span":{"begin":99,"end":101},"obj":"Disease"}],"attributes":[{"id":"A170","pred":"mondo_id","subj":"T170","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A171","pred":"mondo_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/MONDO_0007739"},{"id":"A172","pred":"mondo_id","subj":"T172","obj":"http://purl.obolibrary.org/obo/MONDO_0009973"}],"text":"This analysis identified an increase in Clusters 13 and 14 in COVID-19 patients compared to HD and RD that represent populations expressing HLA-DR, CD38, PD1, KI67 and CD95, as well as Cluster 15 that contained Tbet+CX3CR1+ “effector-like” CD4 T cells (Fig. 3, I and J, and fig. S3G)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T428","span":{"begin":99,"end":101},"obj":"http://purl.obolibrary.org/obo/CLO_0008770"},{"id":"T429","span":{"begin":148,"end":152},"obj":"http://purl.obolibrary.org/obo/PR_000001408"},{"id":"T430","span":{"begin":240,"end":243},"obj":"http://purl.obolibrary.org/obo/PR_000001004"},{"id":"T431","span":{"begin":244,"end":251},"obj":"http://purl.obolibrary.org/obo/CL_0000084"}],"text":"This analysis identified an increase in Clusters 13 and 14 in COVID-19 patients compared to HD and RD that represent populations expressing HLA-DR, CD38, PD1, KI67 and CD95, as well as Cluster 15 that contained Tbet+CX3CR1+ “effector-like” CD4 T cells (Fig. 3, I and J, and fig. S3G)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T129","span":{"begin":92,"end":94},"obj":"Chemical"},{"id":"T130","span":{"begin":99,"end":101},"obj":"Chemical"},{"id":"T131","span":{"begin":144,"end":146},"obj":"Chemical"},{"id":"T132","span":{"begin":154,"end":157},"obj":"Chemical"},{"id":"T133","span":{"begin":225,"end":233},"obj":"Chemical"}],"attributes":[{"id":"A129","pred":"chebi_id","subj":"T129","obj":"http://purl.obolibrary.org/obo/CHEBI_73925"},{"id":"A130","pred":"chebi_id","subj":"T130","obj":"http://purl.obolibrary.org/obo/CHEBI_73812"},{"id":"A131","pred":"chebi_id","subj":"T131","obj":"http://purl.obolibrary.org/obo/CHEBI_73445"},{"id":"A132","pred":"chebi_id","subj":"T132","obj":"http://purl.obolibrary.org/obo/CHEBI_138655"},{"id":"A133","pred":"chebi_id","subj":"T133","obj":"http://purl.obolibrary.org/obo/CHEBI_35224"}],"text":"This analysis identified an increase in Clusters 13 and 14 in COVID-19 patients compared to HD and RD that represent populations expressing HLA-DR, CD38, PD1, KI67 and CD95, as well as Cluster 15 that contained Tbet+CX3CR1+ “effector-like” CD4 T cells (Fig. 3, I and J, and fig. S3G)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T143","span":{"begin":0,"end":284},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"This analysis identified an increase in Clusters 13 and 14 in COVID-19 patients compared to HD and RD that represent populations expressing HLA-DR, CD38, PD1, KI67 and CD95, as well as Cluster 15 that contained Tbet+CX3CR1+ “effector-like” CD4 T cells (Fig. 3, I and J, and fig. S3G)."}