PMC:7402624 / 21099-21723
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T155 | 59-63 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T156 | 147-151 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T157 | 202-206 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T158 | 392-396 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T159 | 429-432 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T160 | 481-485 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T161 | 561-565 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 708 | 53-56 | Gene | denotes | CD4 | Gene:920 |
| 709 | 141-144 | Gene | denotes | CD4 | Gene:920 |
| 710 | 424-428 | Gene | denotes | CD38 | Gene:952 |
| 721 | 230-238 | Species | denotes | patients | Tax:9606 |
| 722 | 347-355 | Species | denotes | patients | Tax:9606 |
| 729 | 91-98 | Chemical | denotes | steroid | MESH:D013256 |
| 738 | 221-229 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 739 | 282-298 | Disease | denotes | acute infections | MESH:D007239 |
| 744 | 475-478 | Gene | denotes | CD4 | Gene:920 |
| 745 | 555-558 | Gene | denotes | CD4 | Gene:920 |
| 746 | 521-529 | Species | denotes | patients | Tax:9606 |
| 747 | 512-520 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T152 | 221-229 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T153 | 288-298 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T154 | 512-520 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T375 | 53-56 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T376 | 57-63 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T377 | 64-74 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T378 | 141-144 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T379 | 145-151 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T380 | 200-206 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T381 | 207-217 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T382 | 255-258 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T383 | 390-396 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T384 | 424-428 | http://purl.obolibrary.org/obo/PR_000001408 | denotes | CD38 |
| T385 | 475-478 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T386 | 479-485 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T387 | 486-496 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activation |
| T388 | 500-501 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T389 | 555-558 | http://purl.obolibrary.org/obo/PR_000001004 | denotes | CD4 |
| T390 | 559-565 | http://purl.obolibrary.org/obo/CL_0000084 | denotes | T cell |
| T391 | 576-577 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T114 | 91-98 | Chemical | denotes | steroid | http://purl.obolibrary.org/obo/CHEBI_35341 |
| T115 | 433-435 | Chemical | denotes | DR | http://purl.obolibrary.org/obo/CHEBI_73445 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T50 | 57-74 | http://purl.obolibrary.org/obo/GO_0042110 | denotes | T cell activation |
| T51 | 59-74 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T52 | 200-217 | http://purl.obolibrary.org/obo/GO_0042110 | denotes | T cell activation |
| T53 | 202-217 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
| T54 | 479-496 | http://purl.obolibrary.org/obo/GO_0042110 | denotes | T cell activation |
| T55 | 481-496 | http://purl.obolibrary.org/obo/GO_0001775 | denotes | cell activation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T132 | 20-168 | Sentence | denotes | Immunosuppression did not impact CD4 T cell activation; however, early steroid administration was weakly associated with CD4 T cell KI67 (fig. S3F). |
| T133 | 169-466 | Sentence | denotes | Together, these data highlight T cell activation in COVID-19 patients similar to what has been observed in other acute infections or vaccinations (37, 39, 40), but also identify patients with high, low, or essentially no T cell response based on KI67+ or CD38+HLA-DR+ compared to control subjects. |
| T134 | 467-574 | Sentence | denotes | Fig. 3 CD4 T cell activation in a subset of COVID-19 patients associates with distinct CD4 T cell subsets. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32669297-32320677-135105204 | 320-322 | 32320677 | denotes | 39 |
| 32669297-28620653-135105205 | 324-326 | 28620653 | denotes | 40 |