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PMC:7402624 / 13971-14604 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T83 33-36 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T84 40-51 Body_part denotes CD38+ cells http://purl.org/sig/ont/fma/fma0326121
T85 46-51 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T86 180-185 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T87 227-232 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T88 369-376 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 429-442 Body_part denotes cell clusters http://purl.org/sig/ont/fma/fma62807
T90 429-433 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T91 586-591 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 429-442 Body_part denotes cell clusters http://purl.obolibrary.org/obo/UBERON_0034922

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
436 40-44 Gene denotes CD38 Gene:952
437 580-583 Gene denotes CD8 Gene:925
441 174-177 Gene denotes CD8 Gene:925
445 123-125 Disease denotes HD MESH:D006816

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T107 123-125 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T108 253-255 Disease denotes HD http://purl.obolibrary.org/obo/MONDO_0007739
T109 275-277 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973
T110 284-292 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T202 40-44 http://purl.obolibrary.org/obo/PR_000001408 denotes CD38
T203 46-51 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T204 174-177 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T205 178-185 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T206 221-224 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T207 225-232 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T208 275-277 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T209 423-426 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T210 427-433 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T211 580-583 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T212 584-591 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T57 37-39 Chemical denotes DR http://purl.obolibrary.org/obo/CHEBI_73445
T58 123-125 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T59 246-251 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T60 253-255 Chemical denotes HD http://purl.obolibrary.org/obo/CHEBI_73925
T61 268-273 Chemical denotes donor http://purl.obolibrary.org/obo/CHEBI_17891
T62 275-277 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T63 369-376 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T93 0-633 Sentence denotes Frequencies of (E) KI67+ and (F) HLA-DR+CD38+ cells and representative flow cytometry plots; green line at upper decile of HD. (G) (Top) Global viSNE projection of non-naïve CD8 T cells for all subjects pooled, non-naïve CD8 T cells from healthy donor (HD), recovered donor (RD), and COVID-19 patients concatenated and overlaid. (Bottom) viSNE projections of indicated protein expression. (H) viSNE projection of non-naïve CD8 T cell clusters identified by FlowSOM clustering. (I) Mean fluorescence intensity (MFI) as indicated, column-scaled z-score. (J) Percentage of non-naive CD8 T cells from each cohort in each FlowSOM cluster.