PMC:7402624 / 13717-14884 JSON TXT

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Id	Subject	Object	Predicate	Lexical cue	fma_id
T80	147-151	Body_part	denotes	cell	http://purl.org/sig/ont/fma/fma68646
T81	186-190	Body_part	denotes	cell	http://purl.org/sig/ont/fma/fma68646
T82	247-252	Body_part	denotes	cells	http://purl.org/sig/ont/fma/fma68646
T83	287-290	Body_part	denotes	HLA	http://purl.org/sig/ont/fma/fma84795
T84	294-305	Body_part	denotes	CD38+ cells	http://purl.org/sig/ont/fma/fma0326121
T85	300-305	Body_part	denotes	cells	http://purl.org/sig/ont/fma/fma68646
T86	434-439	Body_part	denotes	cells	http://purl.org/sig/ont/fma/fma68646
T87	481-486	Body_part	denotes	cells	http://purl.org/sig/ont/fma/fma68646
T88	623-630	Body_part	denotes	protein	http://purl.org/sig/ont/fma/fma67257
T89	683-696	Body_part	denotes	cell clusters	http://purl.org/sig/ont/fma/fma62807
T90	683-687	Body_part	denotes	cell	http://purl.org/sig/ont/fma/fma68646
T91	840-845	Body_part	denotes	cells	http://purl.org/sig/ont/fma/fma68646

Id	Subject	Object	Predicate	Lexical cue	uberon_id
T7	683-696	Body_part	denotes	cell clusters	http://purl.obolibrary.org/obo/UBERON_0034922

Id	Subject	Object	Predicate	Lexical cue	tao:has_database_id
433	141-144	Gene	denotes	CD8	Gene:925
434	180-183	Gene	denotes	CD8	Gene:925
435	241-245	Gene	denotes	CD39	Gene:397298
436	294-298	Gene	denotes	CD38	Gene:952
437	834-837	Gene	denotes	CD8	Gene:925
440	232-235	Gene	denotes	PD1	Gene:100513601
441	428-431	Gene	denotes	CD8	Gene:925
445	377-379	Disease	denotes	HD	MESH:D006816

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T107	377-379	Disease	denotes	HD	http://purl.obolibrary.org/obo/MONDO_0007739
T108	507-509	Disease	denotes	HD	http://purl.obolibrary.org/obo/MONDO_0007739
T109	529-531	Disease	denotes	RD	http://purl.obolibrary.org/obo/MONDO_0009973
T110	538-546	Disease	denotes	COVID-19	http://purl.obolibrary.org/obo/MONDO_0100096
T111	974-976	Disease	denotes	HD	http://purl.obolibrary.org/obo/MONDO_0007739
T112	1003-1005	Disease	denotes	RD	http://purl.obolibrary.org/obo/MONDO_0009973
T113	1017-1025	Disease	denotes	COVID-19	http://purl.obolibrary.org/obo/MONDO_0100096
T114	1096-1098	Disease	denotes	BH	http://purl.obolibrary.org/obo/MONDO_0010873

Id	Subject	Object	Predicate	Lexical cue
T195	1-2	http://purl.obolibrary.org/obo/CLO_0001020	denotes	A
T196	75-76	http://purl.obolibrary.org/obo/CLO_0001021	denotes	B
T197	141-144	http://purl.obolibrary.org/obo/CLO_0053438	denotes	CD8
T198	145-151	http://purl.obolibrary.org/obo/CL_0000084	denotes	T cell
T199	180-183	http://purl.obolibrary.org/obo/CLO_0053438	denotes	CD8
T200	184-190	http://purl.obolibrary.org/obo/CL_0000084	denotes	T cell
T201	247-252	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T202	294-298	http://purl.obolibrary.org/obo/PR_000001408	denotes	CD38
T203	300-305	http://purl.obolibrary.org/obo/GO_0005623	denotes	cells
T204	428-431	http://purl.obolibrary.org/obo/CLO_0053438	denotes	CD8
T205	432-439	http://purl.obolibrary.org/obo/CL_0000084	denotes	T cells
T206	475-478	http://purl.obolibrary.org/obo/CLO_0053438	denotes	CD8
T207	479-486	http://purl.obolibrary.org/obo/CL_0000084	denotes	T cells
T208	529-531	http://purl.obolibrary.org/obo/CLO_0008770	denotes	RD
T209	677-680	http://purl.obolibrary.org/obo/CLO_0053438	denotes	CD8
T210	681-687	http://purl.obolibrary.org/obo/CL_0000084	denotes	T cell
T211	834-837	http://purl.obolibrary.org/obo/CLO_0053438	denotes	CD8
T212	838-845	http://purl.obolibrary.org/obo/CL_0000084	denotes	T cells
T213	1003-1005	http://purl.obolibrary.org/obo/CLO_0008770	denotes	RD
T214	1086-1090	http://purl.obolibrary.org/obo/UBERON_0000473	denotes	test

Id	Subject	Object	Predicate	Lexical cue	chebi_id
T54	34-37	Chemical	denotes	PCA	http://purl.obolibrary.org/obo/CHEBI_36751\|http://purl.obolibrary.org/obo/CHEBI_62248
T56	232-235	Chemical	denotes	PD1	http://purl.obolibrary.org/obo/CHEBI_138655
T57	291-293	Chemical	denotes	DR	http://purl.obolibrary.org/obo/CHEBI_73445
T58	377-379	Chemical	denotes	HD	http://purl.obolibrary.org/obo/CHEBI_73925
T59	500-505	Chemical	denotes	donor	http://purl.obolibrary.org/obo/CHEBI_17891
T60	507-509	Chemical	denotes	HD	http://purl.obolibrary.org/obo/CHEBI_73925
T61	522-527	Chemical	denotes	donor	http://purl.obolibrary.org/obo/CHEBI_17891
T62	529-531	Chemical	denotes	RD	http://purl.obolibrary.org/obo/CHEBI_73812
T63	623-630	Chemical	denotes	protein	http://purl.obolibrary.org/obo/CHEBI_36080
T64	967-972	Chemical	denotes	donor	http://purl.obolibrary.org/obo/CHEBI_17891
T65	974-976	Chemical	denotes	HD	http://purl.obolibrary.org/obo/CHEBI_73925
T66	996-1001	Chemical	denotes	donor	http://purl.obolibrary.org/obo/CHEBI_17891
T67	1003-1005	Chemical	denotes	RD	http://purl.obolibrary.org/obo/CHEBI_73812

Id	Subject	Object	Predicate	Lexical cue
T92	0-253	Sentence	denotes	(A) Principle Component Analysis (PCA) of aggregated flow cytometry data. (B) Representative flow cytometry plots of the gating strategy for CD8 T cell subsets. (C) Frequencies of CD8 T cell subsets as indicated. (D) Frequencies of PD1+ and CD39+ cells.
T93	254-887	Sentence	denotes	Frequencies of (E) KI67+ and (F) HLA-DR+CD38+ cells and representative flow cytometry plots; green line at upper decile of HD. (G) (Top) Global viSNE projection of non-naïve CD8 T cells for all subjects pooled, non-naïve CD8 T cells from healthy donor (HD), recovered donor (RD), and COVID-19 patients concatenated and overlaid. (Bottom) viSNE projections of indicated protein expression. (H) viSNE projection of non-naïve CD8 T cell clusters identified by FlowSOM clustering. (I) Mean fluorescence intensity (MFI) as indicated, column-scaled z-score. (J) Percentage of non-naive CD8 T cells from each cohort in each FlowSOM cluster.
T94	888-1040	Sentence	denotes	Boxes represent IQR. (C, D, E, F, J) Each dot represents an individual healthy donor (HD; green), recovered donor (RD; blue), or COVID-19 patient (red).
T95	1041-1167	Sentence	denotes	Significance determined by unpaired Wilcoxon test with BH correction: p < 0.05, p < 0.01, p < 0.001, and **p < 0.0001.