PMC:7402624 / 131-1408 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7402624","sourcedb":"PMC","sourceid":"7402624","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7402624","text":"ly a global pandemic, but human immune responses to the virus remain poorly understood. We analyzed 125 COVID-19 patients, and compared recovered to healthy individuals using high dimensional cytometry. Integrated analysis of ~200 immune and ~50 clinical features revealed activation of T cell and B cell subsets in a proportion of patients. A subgroup of patients had T cell activation characteristic of acute viral infection and plasmablast responses reaching \u003e30% of circulating B cells. However, another subgroup had lymphocyte activation comparable to uninfected subjects. Stable versus dynamic immunological signatures were identified and linked to trajectories of disease severity change. These analyses identified three “immunotypes” associated with poor clinical trajectories versus improving health. These immunotypes may have implications for the design of therapeutics and vaccines for COVID-19.\n\nThe COVID-19 pandemic has to date caused \u003e7 million infections resulting in over 400,000 deaths. Following infection with SARS-CoV2, COVID-19 patients can experience mild or even asymptomatic disease, or can present with severe disease requiring hospitalization and mechanical ventilation. The case fatality rate can be as high as ~10% (1). Some severe COVID-19 patien","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":289,"end":293},"obj":"Body_part"},{"id":"T2","span":{"begin":300,"end":304},"obj":"Body_part"},{"id":"T3","span":{"begin":371,"end":375},"obj":"Body_part"},{"id":"T4","span":{"begin":431,"end":442},"obj":"Body_part"},{"id":"T5","span":{"begin":484,"end":489},"obj":"Body_part"},{"id":"T6","span":{"begin":521,"end":531},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma84371"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma62863"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"12","span":{"begin":26,"end":31},"obj":"Species"},{"id":"13","span":{"begin":113,"end":121},"obj":"Species"},{"id":"14","span":{"begin":332,"end":340},"obj":"Species"},{"id":"15","span":{"begin":356,"end":364},"obj":"Species"},{"id":"17","span":{"begin":104,"end":112},"obj":"Disease"},{"id":"18","span":{"begin":411,"end":426},"obj":"Disease"},{"id":"19","span":{"begin":898,"end":906},"obj":"Disease"},{"id":"34","span":{"begin":1031,"end":1040},"obj":"Species"},{"id":"35","span":{"begin":1051,"end":1059},"obj":"Species"},{"id":"37","span":{"begin":913,"end":921},"obj":"Disease"},{"id":"38","span":{"begin":961,"end":971},"obj":"Disease"},{"id":"39","span":{"begin":998,"end":1004},"obj":"Disease"},{"id":"40","span":{"begin":1016,"end":1025},"obj":"Disease"},{"id":"41","span":{"begin":1042,"end":1050},"obj":"Disease"},{"id":"42","span":{"begin":1262,"end":1270},"obj":"Disease"}],"attributes":[{"id":"A12","pred":"tao:has_database_id","subj":"12","obj":"Tax:9606"},{"id":"A13","pred":"tao:has_database_id","subj":"13","obj":"Tax:9606"},{"id":"A14","pred":"tao:has_database_id","subj":"14","obj":"Tax:9606"},{"id":"A15","pred":"tao:has_database_id","subj":"15","obj":"Tax:9606"},{"id":"A17","pred":"tao:has_database_id","subj":"17","obj":"MESH:C000657245"},{"id":"A18","pred":"tao:has_database_id","subj":"18","obj":"MESH:D001102"},{"id":"A19","pred":"tao:has_database_id","subj":"19","obj":"MESH:C000657245"},{"id":"A34","pred":"tao:has_database_id","subj":"34","obj":"Tax:2697049"},{"id":"A35","pred":"tao:has_database_id","subj":"35","obj":"Tax:9606"},{"id":"A37","pred":"tao:has_database_id","subj":"37","obj":"MESH:C000657245"},{"id":"A38","pred":"tao:has_database_id","subj":"38","obj":"MESH:D007239"},{"id":"A39","pred":"tao:has_database_id","subj":"39","obj":"MESH:D003643"},{"id":"A40","pred":"tao:has_database_id","subj":"40","obj":"MESH:D007239"},{"id":"A41","pred":"tao:has_database_id","subj":"41","obj":"MESH:C000657245"},{"id":"A42","pred":"tao:has_database_id","subj":"42","obj":"MESH:C000657245"},{"subj":"12","pred":"source","obj":"LitCovid-PubTator"},{"subj":"13","pred":"source","obj":"LitCovid-PubTator"},{"subj":"14","pred":"source","obj":"LitCovid-PubTator"},{"subj":"15","pred":"source","obj":"LitCovid-PubTator"},{"subj":"17","pred":"source","obj":"LitCovid-PubTator"},{"subj":"18","pred":"source","obj":"LitCovid-PubTator"},{"subj":"19","pred":"source","obj":"LitCovid-PubTator"},{"subj":"34","pred":"source","obj":"LitCovid-PubTator"},{"subj":"35","pred":"source","obj":"LitCovid-PubTator"},{"subj":"37","pred":"source","obj":"LitCovid-PubTator"},{"subj":"38","pred":"source","obj":"LitCovid-PubTator"},{"subj":"39","pred":"source","obj":"LitCovid-PubTator"},{"subj":"40","pred":"source","obj":"LitCovid-PubTator"},{"subj":"41","pred":"source","obj":"LitCovid-PubTator"},{"subj":"42","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T3","span":{"begin":104,"end":112},"obj":"Disease"},{"id":"T4","span":{"begin":411,"end":426},"obj":"Disease"},{"id":"T5","span":{"begin":417,"end":426},"obj":"Disease"},{"id":"T6","span":{"begin":898,"end":906},"obj":"Disease"},{"id":"T7","span":{"begin":913,"end":921},"obj":"Disease"},{"id":"T8","span":{"begin":961,"end":971},"obj":"Disease"},{"id":"T9","span":{"begin":1016,"end":1025},"obj":"Disease"},{"id":"T10","span":{"begin":1031,"end":1035},"obj":"Disease"},{"id":"T11","span":{"begin":1042,"end":1050},"obj":"Disease"},{"id":"T12","span":{"begin":1262,"end":1270},"obj":"Disease"}],"attributes":[{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0005108"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1","span":{"begin":3,"end":4},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T2","span":{"begin":26,"end":31},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_9606"},{"id":"T3","span":{"begin":56,"end":61},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T4","span":{"begin":273,"end":283},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T5","span":{"begin":287,"end":293},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T6","span":{"begin":298,"end":304},"obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"T7","span":{"begin":316,"end":317},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T8","span":{"begin":342,"end":343},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T9","span":{"begin":369,"end":375},"obj":"http://purl.obolibrary.org/obo/CL_0000084"},{"id":"T10","span":{"begin":376,"end":386},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T11","span":{"begin":482,"end":489},"obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"T12","span":{"begin":532,"end":542},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T13","span":{"begin":931,"end":934},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T11","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T12","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":32,"end":48},"obj":"http://purl.obolibrary.org/obo/GO_0006955"},{"id":"T2","span":{"begin":369,"end":386},"obj":"http://purl.obolibrary.org/obo/GO_0042110"},{"id":"T3","span":{"begin":371,"end":386},"obj":"http://purl.obolibrary.org/obo/GO_0001775"},{"id":"T4","span":{"begin":411,"end":426},"obj":"http://purl.obolibrary.org/obo/GO_0016032"},{"id":"T5","span":{"begin":521,"end":542},"obj":"http://purl.obolibrary.org/obo/GO_0046649"}],"attributes":[{"subj":"T1","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T2","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T5","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T4","span":{"begin":88,"end":202},"obj":"Sentence"},{"id":"T5","span":{"begin":203,"end":341},"obj":"Sentence"},{"id":"T6","span":{"begin":342,"end":490},"obj":"Sentence"},{"id":"T7","span":{"begin":491,"end":577},"obj":"Sentence"},{"id":"T8","span":{"begin":578,"end":695},"obj":"Sentence"},{"id":"T9","span":{"begin":696,"end":809},"obj":"Sentence"},{"id":"T10","span":{"begin":810,"end":907},"obj":"Sentence"},{"id":"T11","span":{"begin":909,"end":1005},"obj":"Sentence"},{"id":"T12","span":{"begin":1006,"end":1198},"obj":"Sentence"},{"id":"T13","span":{"begin":1199,"end":1249},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T4","pred":"source","obj":"LitCovid-sentences"},{"subj":"T5","pred":"source","obj":"LitCovid-sentences"},{"subj":"T6","pred":"source","obj":"LitCovid-sentences"},{"subj":"T7","pred":"source","obj":"LitCovid-sentences"},{"subj":"T8","pred":"source","obj":"LitCovid-sentences"},{"subj":"T9","pred":"source","obj":"LitCovid-sentences"},{"subj":"T10","pred":"source","obj":"LitCovid-sentences"},{"subj":"T11","pred":"source","obj":"LitCovid-sentences"},{"subj":"T12","pred":"source","obj":"LitCovid-sentences"},{"subj":"T13","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#dfec93","default":true},{"id":"LitCovid-PubTator","color":"#df93ec"},{"id":"LitCovid-PD-MONDO","color":"#93ecc5"},{"id":"LitCovid-PD-CLO","color":"#ecab93"},{"id":"LitCovid-PD-GO-BP","color":"#9395ec"},{"id":"LitCovid-sentences","color":"#afec93"}]}]}}