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PMC:7402624 / 131-1408 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 289-293 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T2 300-304 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T3 371-375 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T4 431-442 Body_part denotes plasmablast http://purl.org/sig/ont/fma/fma84371
T5 484-489 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T6 521-531 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
12 26-31 Species denotes human Tax:9606
13 113-121 Species denotes patients Tax:9606
14 332-340 Species denotes patients Tax:9606
15 356-364 Species denotes patients Tax:9606
17 104-112 Disease denotes COVID-19 MESH:C000657245
18 411-426 Disease denotes viral infection MESH:D001102
19 898-906 Disease denotes COVID-19 MESH:C000657245
34 1031-1040 Species denotes SARS-CoV2 Tax:2697049
35 1051-1059 Species denotes patients Tax:9606
37 913-921 Disease denotes COVID-19 MESH:C000657245
38 961-971 Disease denotes infections MESH:D007239
39 998-1004 Disease denotes deaths MESH:D003643
40 1016-1025 Disease denotes infection MESH:D007239
41 1042-1050 Disease denotes COVID-19 MESH:C000657245
42 1262-1270 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 104-112 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 411-426 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T5 417-426 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 898-906 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 913-921 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 961-971 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T9 1016-1025 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 1031-1035 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 1042-1050 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1262-1270 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 3-4 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 26-31 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T3 56-61 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T4 273-283 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T5 287-293 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T6 298-304 http://purl.obolibrary.org/obo/CL_0000236 denotes B cell
T7 316-317 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 342-343 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T9 369-375 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T10 376-386 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T11 482-489 http://purl.obolibrary.org/obo/CL_0000236 denotes B cells
T12 532-542 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation
T13 931-934 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 32-48 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses
T2 369-386 http://purl.obolibrary.org/obo/GO_0042110 denotes T cell activation
T3 371-386 http://purl.obolibrary.org/obo/GO_0001775 denotes cell activation
T4 411-426 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T5 521-542 http://purl.obolibrary.org/obo/GO_0046649 denotes lymphocyte activation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 88-202 Sentence denotes We analyzed 125 COVID-19 patients, and compared recovered to healthy individuals using high dimensional cytometry.
T5 203-341 Sentence denotes Integrated analysis of ~200 immune and ~50 clinical features revealed activation of T cell and B cell subsets in a proportion of patients.
T6 342-490 Sentence denotes A subgroup of patients had T cell activation characteristic of acute viral infection and plasmablast responses reaching >30% of circulating B cells.
T7 491-577 Sentence denotes However, another subgroup had lymphocyte activation comparable to uninfected subjects.
T8 578-695 Sentence denotes Stable versus dynamic immunological signatures were identified and linked to trajectories of disease severity change.
T9 696-809 Sentence denotes These analyses identified three “immunotypes” associated with poor clinical trajectories versus improving health.
T10 810-907 Sentence denotes These immunotypes may have implications for the design of therapeutics and vaccines for COVID-19.
T11 909-1005 Sentence denotes The COVID-19 pandemic has to date caused >7 million infections resulting in over 400,000 deaths.
T12 1006-1198 Sentence denotes Following infection with SARS-CoV2, COVID-19 patients can experience mild or even asymptomatic disease, or can present with severe disease requiring hospitalization and mechanical ventilation.
T13 1199-1249 Sentence denotes The case fatality rate can be as high as ~10% (1).