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PMC:7394275 / 9787-11136 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T163 270-281 NCBITaxon:5052 denotes Aspergillus
T164 313-319 NCBITaxon:4751 denotes fungal
T165 397-408 NCBITaxon:5052 denotes Aspergillus
T166 670-679 GO:0005840 denotes ribosomal
T167 735-746 NCBITaxon:5052 denotes Aspergillus
T168 750-757 UBERON:0000479 denotes tissues
T169 761-765 BV_4 denotes BALF
T170 817-828 NCBITaxon:5052 denotes Aspergillus
T171 829-832 NCBITaxon:species denotes spp
T172 838-844 PR:000006147 denotes CYP51A
T173 869-870 NCBITaxon:8296 denotes A
T174 870-881 NCBITaxon:31032 denotes . fumigatus
T175 990-998 CHEBI:33893;CHEBI:33893 denotes reagents
T176 1028-1033 UBERON:0001977 denotes serum
T177 1038-1042 BV_4 denotes BALF
T178 1274-1279 UBERON:0000178 denotes blood
T179 1324-1335 UBERON:0001004 denotes respiratory
T71196 270-281 NCBITaxon:5052 denotes Aspergillus
T95830 313-319 NCBITaxon:4751 denotes fungal
T31042 397-408 NCBITaxon:5052 denotes Aspergillus
T44167 670-679 GO:0005840 denotes ribosomal
T80438 735-746 NCBITaxon:5052 denotes Aspergillus
T62724 750-757 UBERON:0000479 denotes tissues
T23730 761-765 BV_4 denotes BALF
T49081 817-828 NCBITaxon:5052 denotes Aspergillus
T81108 829-832 NCBITaxon:species denotes spp
T34970 838-844 PR:000006147 denotes CYP51A
T26672 869-870 NCBITaxon:8296 denotes A
T47994 870-881 NCBITaxon:31032 denotes . fumigatus
T85259 990-998 CHEBI:33893;CHEBI:33893 denotes reagents
T55352 1028-1033 UBERON:0001977 denotes serum
T62010 1038-1042 BV_4 denotes BALF
T90815 1274-1279 UBERON:0000178 denotes blood
T48524 1324-1335 UBERON:0001004 denotes respiratory

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T17 455-458 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T18 670-679 Body_part denotes ribosomal http://purl.org/sig/ont/fma/fma66867
T19 680-683 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T20 750-757 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T21 1028-1033 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T22 1274-1279 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T11 371-393 Body_part denotes morphological features http://purl.obolibrary.org/obo/UBERON_0034768
T12 1028-1033 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 1274-1279 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
348 869-881 Species denotes A. fumigatus Tax:746128
349 1183-1191 Species denotes patients Tax:9606
353 270-281 Species denotes Aspergillus Tax:746128
354 397-408 Species denotes Aspergillus Tax:746128
355 735-746 Species denotes Aspergillus Tax:746128
356 817-828 Species denotes Aspergillus Tax:746128
361 1043-1045 Chemical denotes GM MESH:C012990
373 1171-1182 Disease denotes neutropenic MESH:D009503

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T131 633-635 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T132 1217-1223 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T51 35-36 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 581-582 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 869-870 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T54 1046-1053 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T55 1266-1270 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T56 1274-1279 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T57 1274-1279 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T46 455-458 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T47 633-635 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T48 638-641 Chemical denotes iii http://purl.obolibrary.org/obo/CHEBI_74062
T49 680-683 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T50 990-998 Chemical denotes reagents http://purl.obolibrary.org/obo/CHEBI_33893
T51 1043-1045 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T4 1043-1045 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T56 0-1349 Sentence denotes Therefore, it is necessary to have a definitive confirmation by culture or nonculture technique, including (i) direct microscopic examination with the optical brightener methods, Calcofluor or Blankophor, which may increase the sensitivity and specificity for detecting Aspergillus-like features; (ii) culture on fungal-specific media at 37 °C for 2–5 days, if positive, morphological features of Aspergillus can be identified under the microscope or the DNA sequencing may be used in reference laboratories to identify the species accurately, but usually culture yield is low and a negative result does not exclude the diagnosis of IA; (iii) molecular assays targeting ribosomal DNA (rDNA) sequences can also be used for detection of Aspergillus in tissues or BALF, especially PCR-based assays can be used to detect Aspergillus spp. and CYP51A resistance mutations in A. fumigatus, although these methods have not been standardized or limited by laboratory conditions or proven commercial reagents in some countries [30]; (iv) serum and BALF GM testing are also recommended as an early and accurate marker using less invasive techniques for the diagnosis, especially in neutropenic patients, with advantages of less injury and time-efficient, though sometimes this test in blood samples are less sensitive than cultures of respiratory samples [25].

2_test

Id Subject Object Predicate Lexical cue
32737747-27365388-73473616 1018-1020 27365388 denotes 30