PMC:7388103 / 4628-5462
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T33 | 243-251 | Body_part | denotes | platelet | http://purl.org/sig/ont/fma/fma62851 |
T34 | 267-275 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
T35 | 568-572 | Body_part | denotes | vein | http://purl.org/sig/ont/fma/fma50723 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T8 | 563-572 | Body_part | denotes | deep vein | http://purl.obolibrary.org/obo/UBERON_0035552 |
T9 | 568-572 | Body_part | denotes | vein | http://purl.obolibrary.org/obo/UBERON_0001638 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T55 | 77-112 | Disease | denotes | acute respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
T56 | 83-112 | Disease | denotes | respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
T57 | 126-134 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T58 | 135-144 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T59 | 150-166 | Disease | denotes | thrombocytopenia | http://purl.obolibrary.org/obo/MONDO_0002049 |
T60 | 220-223 | Disease | denotes | HIT | http://purl.obolibrary.org/obo/MONDO_0018048 |
T61 | 341-343 | Disease | denotes | OD | http://purl.obolibrary.org/obo/MONDO_0017178 |
T62 | 520-523 | Disease | denotes | HIT | http://purl.obolibrary.org/obo/MONDO_0018048 |
T63 | 573-583 | Disease | denotes | thrombosis | http://purl.obolibrary.org/obo/MONDO_0000831 |
T64 | 608-626 | Disease | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/MONDO_0005279 |
T65 | 674-684 | Disease | denotes | Thrombosis | http://purl.obolibrary.org/obo/MONDO_0000831 |
T66 | 714-758 | Disease | denotes | disseminated intravascular coagulation (DIC) | http://purl.obolibrary.org/obo/MONDO_0001243 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T56 | 62-63 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T57 | 232-233 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T58 | 551-552 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T59 | 568-572 | http://purl.obolibrary.org/obo/UBERON_0001638 | denotes | vein |
T60 | 568-572 | http://www.ebi.ac.uk/efo/EFO_0000816 | denotes | vein |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T22 | 301-311 | Chemical | denotes | argatroban | http://purl.obolibrary.org/obo/CHEBI_48720 |
T23 | 754-757 | Chemical | denotes | DIC | http://purl.obolibrary.org/obo/CHEBI_4305|http://purl.obolibrary.org/obo/CHEBI_53092 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9 | 741-752 | http://purl.obolibrary.org/obo/GO_0050817 | denotes | coagulation |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T45 | 0-224 | Sentence | denotes | We encountered 4 additional patients admitted to our ICU with a diagnosis of acute respiratory distress syndrome secondary to COVID-19 infection with thrombocytopenia, and an intermediate to high pretest probability for HIT. |
T46 | 225-372 | Sentence | denotes | Due to a positive platelet factor 4 (PF4) antibody, they were started on an argatroban, pending send out results of OD levels and functional assay. |
T47 | 373-403 | Sentence | denotes | However, the SRA was negative. |
T48 | 404-524 | Sentence | denotes | Interestingly, their clinical characteristics (reported in Table 1) were similar to those of our patients with true HIT. |
T49 | 525-627 | Sentence | denotes | Two of these patients had a confirmed deep vein thrombosis, and one with suspected pulmonary embolism. |
T50 | 628-759 | Sentence | denotes | Also, 2 patients met International Society on Thrombosis and Haemostasis criteria for disseminated intravascular coagulation (DIC). |
T51 | 760-834 | Sentence | denotes | All the patients were in hypotensive shock, requiring vasopressor support. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T34 | 83-103 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
T35 | 150-166 | Phenotype | denotes | thrombocytopenia | http://purl.obolibrary.org/obo/HP_0001873 |
T36 | 220-223 | Phenotype | denotes | HIT | http://purl.obolibrary.org/obo/HP_0011874 |
T37 | 520-523 | Phenotype | denotes | HIT | http://purl.obolibrary.org/obo/HP_0011874 |
T38 | 563-583 | Phenotype | denotes | deep vein thrombosis | http://purl.obolibrary.org/obo/HP_0002625 |
T39 | 608-626 | Phenotype | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/HP_0002204 |
T40 | 714-752 | Phenotype | denotes | disseminated intravascular coagulation | http://purl.obolibrary.org/obo/HP_0005521 |
T41 | 754-757 | Phenotype | denotes | DIC | http://purl.obolibrary.org/obo/HP_0005521 |
T42 | 797-802 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
190 | 262-265 | Gene | denotes | PF4 | Gene:5196 |
191 | 28-36 | Species | denotes | patients | Tax:9606 |
192 | 501-509 | Species | denotes | patients | Tax:9606 |
193 | 538-546 | Species | denotes | patients | Tax:9606 |
194 | 636-644 | Species | denotes | patients | Tax:9606 |
195 | 768-776 | Species | denotes | patients | Tax:9606 |
196 | 301-311 | Chemical | denotes | argatroban | MESH:C031942 |
197 | 386-389 | Chemical | denotes | SRA | |
198 | 77-112 | Disease | denotes | acute respiratory distress syndrome | MESH:D012128 |
199 | 126-134 | Disease | denotes | COVID-19 | MESH:C000657245 |
200 | 135-144 | Disease | denotes | infection | MESH:D007239 |
201 | 150-166 | Disease | denotes | thrombocytopenia | MESH:D013921 |
202 | 220-223 | Disease | denotes | HIT | MESH:D013921 |
203 | 520-523 | Disease | denotes | HIT | MESH:D013921 |
204 | 563-583 | Disease | denotes | deep vein thrombosis | MESH:D020246 |
205 | 608-626 | Disease | denotes | pulmonary embolism | MESH:D011655 |
206 | 674-684 | Disease | denotes | Thrombosis | MESH:D013927 |
207 | 714-752 | Disease | denotes | disseminated intravascular coagulation | MESH:D004211 |
208 | 754-757 | Disease | denotes | DIC | MESH:D004211 |
209 | 785-802 | Disease | denotes | hypotensive shock | MESH:D007022 |