PMC:7386785 / 99437-100912 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":563,"end":567},"obj":"Body_part"},{"id":"T2","span":{"begin":684,"end":690},"obj":"Body_part"},{"id":"T3","span":{"begin":1127,"end":1132},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma256135"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma67498"}],"text":"Patient characteristics and setting Facility cases: 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to\u2028epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: ChinaDates: 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C\nCough\nExpectoration\nFatigue\nHeadache\nDizziness\nShortness of breath\nMyalgia or arthralgia\nSore throat\nNasal symptoms and diarrhoea\nSeverity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases\nSevere: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg\nVery severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission\nDemographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). Range 24‐85. Male/female: 11 (52.4%)/10 (47.6%)Exposure history: 19/21 (90.5%) had a clear epidemiological history of COVID‐19. 7 patients, from 5 family clusters, had close contact with their family members"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T76","span":{"begin":684,"end":690},"obj":"Body_part"},{"id":"T77","span":{"begin":1127,"end":1132},"obj":"Body_part"}],"attributes":[{"id":"A76","pred":"uberon_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"id":"A77","pred":"uberon_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/UBERON_0000062"}],"text":"Patient characteristics and setting Facility cases: 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to\u2028epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: ChinaDates: 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C\nCough\nExpectoration\nFatigue\nHeadache\nDizziness\nShortness of breath\nMyalgia or arthralgia\nSore throat\nNasal symptoms and diarrhoea\nSeverity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases\nSevere: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg\nVery severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission\nDemographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). Range 24‐85. Male/female: 11 (52.4%)/10 (47.6%)Exposure history: 19/21 (90.5%) had a clear epidemiological history of COVID‐19. 7 patients, from 5 family clusters, had close contact with their family members"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T432","span":{"begin":394,"end":402},"obj":"Disease"},{"id":"T433","span":{"begin":679,"end":690},"obj":"Disease"},{"id":"T434","span":{"begin":710,"end":719},"obj":"Disease"},{"id":"T435","span":{"begin":794,"end":803},"obj":"Disease"},{"id":"T436","span":{"begin":1043,"end":1062},"obj":"Disease"},{"id":"T437","span":{"begin":1386,"end":1394},"obj":"Disease"}],"attributes":[{"id":"A432","pred":"mondo_id","subj":"T432","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A433","pred":"mondo_id","subj":"T433","obj":"http://purl.obolibrary.org/obo/MONDO_0002258"},{"id":"A434","pred":"mondo_id","subj":"T434","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A435","pred":"mondo_id","subj":"T435","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A436","pred":"mondo_id","subj":"T436","obj":"http://purl.obolibrary.org/obo/MONDO_0021113"},{"id":"A437","pred":"mondo_id","subj":"T437","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Patient characteristics and setting Facility cases: 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to\u2028epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: ChinaDates: 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C\nCough\nExpectoration\nFatigue\nHeadache\nDizziness\nShortness of breath\nMyalgia or arthralgia\nSore throat\nNasal symptoms and diarrhoea\nSeverity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases\nSevere: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg\nVery severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission\nDemographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). Range 24‐85. Male/female: 11 (52.4%)/10 (47.6%)Exposure history: 19/21 (90.5%) had a clear epidemiological history of COVID‐19. 7 patients, from 5 family clusters, had close contact with their family members"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1","span":{"begin":77,"end":84},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T2","span":{"begin":170,"end":181},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T3","span":{"begin":192,"end":193},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T4","span":{"begin":556,"end":557},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T5","span":{"begin":1127,"end":1132},"obj":"http://purl.obolibrary.org/obo/UBERON_0003103"},{"id":"T6","span":{"begin":1281,"end":1285},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T7","span":{"begin":1281,"end":1285},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T8","span":{"begin":1286,"end":1292},"obj":"http://purl.obolibrary.org/obo/UBERON_0003100"},{"id":"T9","span":{"begin":1294,"end":1296},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T10","span":{"begin":1351,"end":1352},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Patient characteristics and setting Facility cases: 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to\u2028epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: ChinaDates: 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C\nCough\nExpectoration\nFatigue\nHeadache\nDizziness\nShortness of breath\nMyalgia or arthralgia\nSore throat\nNasal symptoms and diarrhoea\nSeverity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases\nSevere: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg\nVery severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission\nDemographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). Range 24‐85. Male/female: 11 (52.4%)/10 (47.6%)Exposure history: 19/21 (90.5%) had a clear epidemiological history of COVID‐19. 7 patients, from 5 family clusters, had close contact with their family members"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T29918","span":{"begin":1189,"end":1194},"obj":"Chemical"}],"attributes":[{"id":"A36263","pred":"chebi_id","subj":"T29918","obj":"http://purl.obolibrary.org/obo/CHEBI_24433"}],"text":"Patient characteristics and setting Facility cases: 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to\u2028epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: ChinaDates: 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C\nCough\nExpectoration\nFatigue\nHeadache\nDizziness\nShortness of breath\nMyalgia or arthralgia\nSore throat\nNasal symptoms and diarrhoea\nSeverity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases\nSevere: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg\nVery severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission\nDemographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). Range 24‐85. Male/female: 11 (52.4%)/10 (47.6%)Exposure history: 19/21 (90.5%) had a clear epidemiological history of COVID‐19. 7 patients, from 5 family clusters, had close contact with their family members"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T345","span":{"begin":590,"end":595},"obj":"Phenotype"},{"id":"T346","span":{"begin":610,"end":617},"obj":"Phenotype"},{"id":"T347","span":{"begin":618,"end":626},"obj":"Phenotype"},{"id":"T348","span":{"begin":627,"end":636},"obj":"Phenotype"},{"id":"T349","span":{"begin":637,"end":656},"obj":"Phenotype"},{"id":"T350","span":{"begin":657,"end":664},"obj":"Phenotype"},{"id":"T351","span":{"begin":668,"end":678},"obj":"Phenotype"},{"id":"T352","span":{"begin":679,"end":690},"obj":"Phenotype"},{"id":"T353","span":{"begin":710,"end":719},"obj":"Phenotype"},{"id":"T354","span":{"begin":755,"end":760},"obj":"Phenotype"},{"id":"T355","span":{"begin":794,"end":803},"obj":"Phenotype"},{"id":"T356","span":{"begin":1043,"end":1062},"obj":"Phenotype"},{"id":"T357","span":{"begin":1097,"end":1102},"obj":"Phenotype"}],"attributes":[{"id":"A345","pred":"hp_id","subj":"T345","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"id":"A346","pred":"hp_id","subj":"T346","obj":"http://purl.obolibrary.org/obo/HP_0012378"},{"id":"A347","pred":"hp_id","subj":"T347","obj":"http://purl.obolibrary.org/obo/HP_0002315"},{"id":"A348","pred":"hp_id","subj":"T348","obj":"http://purl.obolibrary.org/obo/HP_0002321"},{"id":"A349","pred":"hp_id","subj":"T349","obj":"http://purl.obolibrary.org/obo/HP_0002098"},{"id":"A350","pred":"hp_id","subj":"T350","obj":"http://purl.obolibrary.org/obo/HP_0003326"},{"id":"A351","pred":"hp_id","subj":"T351","obj":"http://purl.obolibrary.org/obo/HP_0002829"},{"id":"A352","pred":"hp_id","subj":"T352","obj":"http://purl.obolibrary.org/obo/HP_0033050"},{"id":"A353","pred":"hp_id","subj":"T353","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A354","pred":"hp_id","subj":"T354","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A355","pred":"hp_id","subj":"T355","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A356","pred":"hp_id","subj":"T356","obj":"http://purl.obolibrary.org/obo/HP_0002878"},{"id":"A357","pred":"hp_id","subj":"T357","obj":"http://purl.obolibrary.org/obo/HP_0031273"}],"text":"Patient characteristics and setting Facility cases: 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to\u2028epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: ChinaDates: 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C\nCough\nExpectoration\nFatigue\nHeadache\nDizziness\nShortness of breath\nMyalgia or arthralgia\nSore throat\nNasal symptoms and diarrhoea\nSeverity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases\nSevere: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg\nVery severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission\nDemographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). Range 24‐85. Male/female: 11 (52.4%)/10 (47.6%)Exposure history: 19/21 (90.5%) had a clear epidemiological history of COVID‐19. 7 patients, from 5 family clusters, had close contact with their family members"}

{"project":"LitCovid-sentences","denotations":[{"id":"T1091","span":{"begin":0,"end":52},"obj":"Sentence"},{"id":"T1092","span":{"begin":53,"end":135},"obj":"Sentence"},{"id":"T1093","span":{"begin":136,"end":492},"obj":"Sentence"},{"id":"T1094","span":{"begin":493,"end":504},"obj":"Sentence"},{"id":"T1095","span":{"begin":505,"end":589},"obj":"Sentence"},{"id":"T1096","span":{"begin":590,"end":595},"obj":"Sentence"},{"id":"T1097","span":{"begin":596,"end":609},"obj":"Sentence"},{"id":"T1098","span":{"begin":610,"end":617},"obj":"Sentence"},{"id":"T1099","span":{"begin":618,"end":626},"obj":"Sentence"},{"id":"T1100","span":{"begin":627,"end":636},"obj":"Sentence"},{"id":"T1101","span":{"begin":637,"end":656},"obj":"Sentence"},{"id":"T1102","span":{"begin":657,"end":678},"obj":"Sentence"},{"id":"T1103","span":{"begin":679,"end":690},"obj":"Sentence"},{"id":"T1104","span":{"begin":691,"end":719},"obj":"Sentence"},{"id":"T1105","span":{"begin":720,"end":877},"obj":"Sentence"},{"id":"T1106","span":{"begin":878,"end":990},"obj":"Sentence"},{"id":"T1107","span":{"begin":991,"end":1168},"obj":"Sentence"},{"id":"T1108","span":{"begin":1169,"end":1267},"obj":"Sentence"},{"id":"T1109","span":{"begin":1268,"end":1280},"obj":"Sentence"},{"id":"T1110","span":{"begin":1281,"end":1293},"obj":"Sentence"},{"id":"T1111","span":{"begin":1294,"end":1332},"obj":"Sentence"},{"id":"T1112","span":{"begin":1333,"end":1395},"obj":"Sentence"},{"id":"T1113","span":{"begin":1396,"end":1475},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Patient characteristics and setting Facility cases: 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to\u2028epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: ChinaDates: 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C\nCough\nExpectoration\nFatigue\nHeadache\nDizziness\nShortness of breath\nMyalgia or arthralgia\nSore throat\nNasal symptoms and diarrhoea\nSeverity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases\nSevere: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg\nVery severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission\nDemographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). Range 24‐85. Male/female: 11 (52.4%)/10 (47.6%)Exposure history: 19/21 (90.5%) had a clear epidemiological history of COVID‐19. 7 patients, from 5 family clusters, had close contact with their family members"}

{"project":"LitCovid-PubTator","denotations":[{"id":"1835","span":{"begin":0,"end":7},"obj":"Species"},{"id":"1836","span":{"begin":53,"end":62},"obj":"Species"},{"id":"1837","span":{"begin":149,"end":157},"obj":"Species"},{"id":"1838","span":{"begin":1398,"end":1406},"obj":"Species"},{"id":"1861","span":{"begin":394,"end":402},"obj":"Disease"},{"id":"1862","span":{"begin":732,"end":737},"obj":"Disease"},{"id":"1863","span":{"begin":755,"end":760},"obj":"Disease"},{"id":"1864","span":{"begin":768,"end":788},"obj":"Disease"},{"id":"1865","span":{"begin":794,"end":803},"obj":"Disease"},{"id":"1866","span":{"begin":1043,"end":1062},"obj":"Disease"},{"id":"1867","span":{"begin":1097,"end":1102},"obj":"Disease"},{"id":"1868","span":{"begin":1127,"end":1140},"obj":"Disease"},{"id":"1869","span":{"begin":1183,"end":1188},"obj":"Disease"},{"id":"1870","span":{"begin":1386,"end":1394},"obj":"Disease"}],"attributes":[{"id":"A1835","pred":"tao:has_database_id","subj":"1835","obj":"Tax:9606"},{"id":"A1836","pred":"tao:has_database_id","subj":"1836","obj":"Tax:2697049"},{"id":"A1837","pred":"tao:has_database_id","subj":"1837","obj":"Tax:9606"},{"id":"A1838","pred":"tao:has_database_id","subj":"1838","obj":"Tax:9606"},{"id":"A1861","pred":"tao:has_database_id","subj":"1861","obj":"MESH:C000657245"},{"id":"A1862","pred":"tao:has_database_id","subj":"1862","obj":"MESH:C000657245"},{"id":"A1863","pred":"tao:has_database_id","subj":"1863","obj":"MESH:D005334"},{"id":"A1864","pred":"tao:has_database_id","subj":"1864","obj":"MESH:D012818"},{"id":"A1865","pred":"tao:has_database_id","subj":"1865","obj":"MESH:D011014"},{"id":"A1866","pred":"tao:has_database_id","subj":"1866","obj":"MESH:D012131"},{"id":"A1867","pred":"tao:has_database_id","subj":"1867","obj":"MESH:D012769"},{"id":"A1868","pred":"tao:has_database_id","subj":"1868","obj":"MESH:D009102"},{"id":"A1869","pred":"tao:has_database_id","subj":"1869","obj":"MESH:C000657245"},{"id":"A1870","pred":"tao:has_database_id","subj":"1870","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Patient characteristics and setting Facility cases: 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to\u2028epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: ChinaDates: 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C\nCough\nExpectoration\nFatigue\nHeadache\nDizziness\nShortness of breath\nMyalgia or arthralgia\nSore throat\nNasal symptoms and diarrhoea\nSeverity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases\nSevere: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg\nVery severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission\nDemographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). Range 24‐85. Male/female: 11 (52.4%)/10 (47.6%)Exposure history: 19/21 (90.5%) had a clear epidemiological history of COVID‐19. 7 patients, from 5 family clusters, had close contact with their family members"}