PMC:7386785 / 99437-100912
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 563-567 | Body_part | denotes | body | http://purl.org/sig/ont/fma/fma256135 |
| T2 | 684-690 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T3 | 1127-1132 | Body_part | denotes | organ | http://purl.org/sig/ont/fma/fma67498 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T76 | 684-690 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T77 | 1127-1132 | Body_part | denotes | organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T432 | 394-402 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T433 | 679-690 | Disease | denotes | Sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
| T434 | 710-719 | Disease | denotes | diarrhoea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T435 | 794-803 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T436 | 1043-1062 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
| T437 | 1386-1394 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 77-84 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T2 | 170-181 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing was |
| T3 | 192-193 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T4 | 556-557 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T5 | 1127-1132 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organ |
| T6 | 1281-1285 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | Male |
| T7 | 1281-1285 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | Male |
| T8 | 1286-1292 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | female |
| T9 | 1294-1296 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T10 | 1351-1352 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T29918 | 1189-1194 | Chemical | denotes | group | http://purl.obolibrary.org/obo/CHEBI_24433 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T345 | 590-595 | Phenotype | denotes | Cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T346 | 610-617 | Phenotype | denotes | Fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
| T347 | 618-626 | Phenotype | denotes | Headache | http://purl.obolibrary.org/obo/HP_0002315 |
| T348 | 627-636 | Phenotype | denotes | Dizziness | http://purl.obolibrary.org/obo/HP_0002321 |
| T349 | 637-656 | Phenotype | denotes | Shortness of breath | http://purl.obolibrary.org/obo/HP_0002098 |
| T350 | 657-664 | Phenotype | denotes | Myalgia | http://purl.obolibrary.org/obo/HP_0003326 |
| T351 | 668-678 | Phenotype | denotes | arthralgia | http://purl.obolibrary.org/obo/HP_0002829 |
| T352 | 679-690 | Phenotype | denotes | Sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
| T353 | 710-719 | Phenotype | denotes | diarrhoea | http://purl.obolibrary.org/obo/HP_0002014 |
| T354 | 755-760 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T355 | 794-803 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T356 | 1043-1062 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
| T357 | 1097-1102 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1091 | 0-52 | Sentence | denotes | Patient characteristics and setting Facility cases: |
| T1092 | 53-135 | Sentence | denotes | 2019‐nCoV real‐time PCR testing, which was positive in 19 cases (confirmed cases). |
| T1093 | 136-492 | Sentence | denotes | In another 2 patients, though PCR testing was negative, a clinical diagnosis was made according to epidemiological evidence, consistent clinical and CT findings (clinical cases)Facility controls: for the cases with negative viral detection, the diagnosis of COVID‐19 was excluded based on inconsistent epidemiological, clinical or radiological dataCountry: |
| T1094 | 493-504 | Sentence | denotes | ChinaDates: |
| T1095 | 505-589 | Sentence | denotes | 21 January 2020‐15 February 2020SymptomsFever with a mean body temperature of 37.8 C |
| T1096 | 590-595 | Sentence | denotes | Cough |
| T1097 | 596-609 | Sentence | denotes | Expectoration |
| T1098 | 610-617 | Sentence | denotes | Fatigue |
| T1099 | 618-626 | Sentence | denotes | Headache |
| T1100 | 627-636 | Sentence | denotes | Dizziness |
| T1101 | 637-656 | Sentence | denotes | Shortness of breath |
| T1102 | 657-678 | Sentence | denotes | Myalgia or arthralgia |
| T1103 | 679-690 | Sentence | denotes | Sore throat |
| T1104 | 691-719 | Sentence | denotes | Nasal symptoms and diarrhoea |
| T1105 | 720-877 | Sentence | denotes | Severity of COVID‐19Mild‐moderate: fever and/or respiratory symptoms with pneumonia in radiology examination, without signs of severe or very severe diseases |
| T1106 | 878-990 | Sentence | denotes | Severe: presence of 1 of the following: respiratory rate ≥ 30 beat/min; SpO2 ≤ 93% at rest; PaO2/FiO2 ≤ 300 mmHg |
| T1107 | 991-1168 | Sentence | denotes | Very severe: presence of 1 of the following: severe respiratory failure requiring mechanical ventilation; shock; complicated with other organ failure and requiring ICU admission |
| T1108 | 1169-1267 | Sentence | denotes | Demographics: COVID‐group only: median age was 42.0 years (25th‐75th percentile, 34.5‐66.0 years). |
| T1109 | 1268-1280 | Sentence | denotes | Range 24‐85. |
| T1110 | 1281-1293 | Sentence | denotes | Male/female: |
| T1111 | 1294-1332 | Sentence | denotes | 11 (52.4%)/10 (47.6%)Exposure history: |
| T1112 | 1333-1395 | Sentence | denotes | 19/21 (90.5%) had a clear epidemiological history of COVID‐19. |
| T1113 | 1396-1475 | Sentence | denotes | 7 patients, from 5 family clusters, had close contact with their family members |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1835 | 0-7 | Species | denotes | Patient | Tax:9606 |
| 1836 | 53-62 | Species | denotes | 2019‐nCoV | Tax:2697049 |
| 1837 | 149-157 | Species | denotes | patients | Tax:9606 |
| 1838 | 1398-1406 | Species | denotes | patients | Tax:9606 |
| 1861 | 394-402 | Disease | denotes | COVID‐19 | MESH:C000657245 |
| 1862 | 732-737 | Disease | denotes | COVID | MESH:C000657245 |
| 1863 | 755-760 | Disease | denotes | fever | MESH:D005334 |
| 1864 | 768-788 | Disease | denotes | respiratory symptoms | MESH:D012818 |
| 1865 | 794-803 | Disease | denotes | pneumonia | MESH:D011014 |
| 1866 | 1043-1062 | Disease | denotes | respiratory failure | MESH:D012131 |
| 1867 | 1097-1102 | Disease | denotes | shock | MESH:D012769 |
| 1868 | 1127-1140 | Disease | denotes | organ failure | MESH:D009102 |
| 1869 | 1183-1188 | Disease | denotes | COVID | MESH:C000657245 |
| 1870 | 1386-1394 | Disease | denotes | COVID‐19 | MESH:C000657245 |