PMC:7386785 / 91731-92622 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T95","span":{"begin":111,"end":117},"obj":"Body_part"},{"id":"T96","span":{"begin":422,"end":428},"obj":"Body_part"},{"id":"T97","span":{"begin":460,"end":465},"obj":"Body_part"},{"id":"T98","span":{"begin":614,"end":619},"obj":"Body_part"}],"attributes":[{"id":"A95","pred":"fma_id","subj":"T95","obj":"http://purl.org/sig/ont/fma/fma228738"},{"id":"A96","pred":"fma_id","subj":"T96","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A97","pred":"fma_id","subj":"T97","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A98","pred":"fma_id","subj":"T98","obj":"http://purl.org/sig/ont/fma/fma9576"}],"text":"Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: ChinaDates: 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: 8/3), controls (M/F: 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases)"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T66","span":{"begin":111,"end":117},"obj":"Body_part"},{"id":"T67","span":{"begin":422,"end":428},"obj":"Body_part"},{"id":"T68","span":{"begin":460,"end":465},"obj":"Body_part"},{"id":"T69","span":{"begin":614,"end":619},"obj":"Body_part"}],"attributes":[{"id":"A66","pred":"uberon_id","subj":"T66","obj":"http://purl.obolibrary.org/obo/UBERON_0000341"},{"id":"A67","pred":"uberon_id","subj":"T67","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A68","pred":"uberon_id","subj":"T68","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"id":"A69","pred":"uberon_id","subj":"T69","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"}],"text":"Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: ChinaDates: 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: 8/3), controls (M/F: 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases)"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T404","span":{"begin":193,"end":202},"obj":"Disease"},{"id":"T405","span":{"begin":244,"end":248},"obj":"Disease"},{"id":"T406","span":{"begin":342,"end":351},"obj":"Disease"}],"attributes":[{"id":"A404","pred":"mondo_id","subj":"T404","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A405","pred":"mondo_id","subj":"T405","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A406","pred":"mondo_id","subj":"T406","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"}],"text":"Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: ChinaDates: 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: 8/3), controls (M/F: 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases)"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T597","span":{"begin":85,"end":89},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T598","span":{"begin":109,"end":110},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T599","span":{"begin":124,"end":128},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T600","span":{"begin":157,"end":165},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T601","span":{"begin":261,"end":266},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T602","span":{"begin":460,"end":465},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T603","span":{"begin":473,"end":474},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T604","span":{"begin":581,"end":582},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T605","span":{"begin":614,"end":619},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T606","span":{"begin":728,"end":732},"obj":"http://purl.obolibrary.org/obo/CLO_0002986"},{"id":"T607","span":{"begin":783,"end":785},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T608","span":{"begin":798,"end":800},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"}],"text":"Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: ChinaDates: 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: 8/3), controls (M/F: 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases)"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T38","span":{"begin":650,"end":652},"obj":"Chemical"}],"attributes":[{"id":"A38","pred":"chebi_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/CHEBI_74807"}],"text":"Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: ChinaDates: 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: 8/3), controls (M/F: 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases)"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T307","span":{"begin":193,"end":202},"obj":"Phenotype"},{"id":"T308","span":{"begin":342,"end":351},"obj":"Phenotype"},{"id":"T309","span":{"begin":415,"end":420},"obj":"Phenotype"},{"id":"T310","span":{"begin":430,"end":435},"obj":"Phenotype"},{"id":"T311","span":{"begin":437,"end":445},"obj":"Phenotype"},{"id":"T312","span":{"begin":460,"end":470},"obj":"Phenotype"},{"id":"T313","span":{"begin":500,"end":508},"obj":"Phenotype"},{"id":"T314","span":{"begin":841,"end":846},"obj":"Phenotype"}],"attributes":[{"id":"A307","pred":"hp_id","subj":"T307","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A308","pred":"hp_id","subj":"T308","obj":"http://purl.obolibrary.org/obo/HP_0002090"},{"id":"A309","pred":"hp_id","subj":"T309","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"id":"A310","pred":"hp_id","subj":"T310","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A311","pred":"hp_id","subj":"T311","obj":"http://purl.obolibrary.org/obo/HP_0002094"},{"id":"A312","pred":"hp_id","subj":"T312","obj":"http://purl.obolibrary.org/obo/HP_0100749"},{"id":"A313","pred":"hp_id","subj":"T313","obj":"http://purl.obolibrary.org/obo/HP_0030830"},{"id":"A314","pred":"hp_id","subj":"T314","obj":"http://purl.obolibrary.org/obo/HP_0001945"}],"text":"Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: ChinaDates: 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: 8/3), controls (M/F: 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases)"}

{"project":"LitCovid-sentences","denotations":[{"id":"T955","span":{"begin":0,"end":123},"obj":"Sentence"},{"id":"T956","span":{"begin":124,"end":275},"obj":"Sentence"},{"id":"T957","span":{"begin":276,"end":287},"obj":"Sentence"},{"id":"T958","span":{"begin":288,"end":730},"obj":"Sentence"},{"id":"T959","span":{"begin":731,"end":751},"obj":"Sentence"},{"id":"T960","span":{"begin":752,"end":891},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: ChinaDates: 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: 8/3), controls (M/F: 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases)"}

{"project":"LitCovid-PubTator","denotations":[{"id":"1699","span":{"begin":0,"end":7},"obj":"Species"},{"id":"1700","span":{"begin":203,"end":211},"obj":"Species"},{"id":"1701","span":{"begin":244,"end":253},"obj":"Species"},{"id":"1702","span":{"begin":367,"end":375},"obj":"Species"},{"id":"1703","span":{"begin":827,"end":835},"obj":"Species"},{"id":"1721","span":{"begin":193,"end":202},"obj":"Disease"},{"id":"1722","span":{"begin":232,"end":240},"obj":"Disease"},{"id":"1723","span":{"begin":342,"end":351},"obj":"Disease"},{"id":"1724","span":{"begin":415,"end":420},"obj":"Disease"},{"id":"1725","span":{"begin":430,"end":435},"obj":"Disease"},{"id":"1726","span":{"begin":437,"end":445},"obj":"Disease"},{"id":"1727","span":{"begin":450,"end":470},"obj":"Disease"},{"id":"1728","span":{"begin":841,"end":846},"obj":"Disease"},{"id":"1729","span":{"begin":850,"end":870},"obj":"Disease"}],"attributes":[{"id":"A1699","pred":"tao:has_database_id","subj":"1699","obj":"Tax:9606"},{"id":"A1700","pred":"tao:has_database_id","subj":"1700","obj":"Tax:9606"},{"id":"A1701","pred":"tao:has_database_id","subj":"1701","obj":"Tax:2697049"},{"id":"A1702","pred":"tao:has_database_id","subj":"1702","obj":"Tax:9606"},{"id":"A1703","pred":"tao:has_database_id","subj":"1703","obj":"Tax:9606"},{"id":"A1721","pred":"tao:has_database_id","subj":"1721","obj":"MESH:D011014"},{"id":"A1722","pred":"tao:has_database_id","subj":"1722","obj":"MESH:D007239"},{"id":"A1723","pred":"tao:has_database_id","subj":"1723","obj":"MESH:D011014"},{"id":"A1724","pred":"tao:has_database_id","subj":"1724","obj":"MESH:D003371"},{"id":"A1725","pred":"tao:has_database_id","subj":"1725","obj":"MESH:D005334"},{"id":"A1726","pred":"tao:has_database_id","subj":"1726","obj":"MESH:D004417"},{"id":"A1727","pred":"tao:has_database_id","subj":"1727","obj":"MESH:D002637"},{"id":"A1728","pred":"tao:has_database_id","subj":"1728","obj":"MESH:D005334"},{"id":"A1729","pred":"tao:has_database_id","subj":"1729","obj":"MESH:D012818"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: ChinaDates: 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: 8/3), controls (M/F: 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases)"}