PMC:7386785 / 91731-92622
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T95 | 111-117 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T96 | 422-428 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T97 | 460-465 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T98 | 614-619 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T66 | 111-117 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T67 | 422-428 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T68 | 460-465 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T69 | 614-619 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T404 | 193-202 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T405 | 244-248 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T406 | 342-351 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T597 | 85-89 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T598 | 109-110 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T599 | 124-128 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Test |
| T600 | 157-165 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test was |
| T601 | 261-266 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T602 | 460-465 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T603 | 473-474 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T604 | 581-582 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T605 | 614-619 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T606 | 728-732 | http://purl.obolibrary.org/obo/CLO_0002986 | denotes | F: 8 |
| T607 | 783-785 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T608 | 798-800 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T38 | 650-652 | Chemical | denotes | SD | http://purl.obolibrary.org/obo/CHEBI_74807 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T307 | 193-202 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T308 | 342-351 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T309 | 415-420 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T310 | 430-435 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T311 | 437-445 | Phenotype | denotes | dyspnoea | http://purl.obolibrary.org/obo/HP_0002094 |
| T312 | 460-470 | Phenotype | denotes | chest pain | http://purl.obolibrary.org/obo/HP_0100749 |
| T313 | 500-508 | Phenotype | denotes | crackles | http://purl.obolibrary.org/obo/HP_0030830 |
| T314 | 841-846 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T955 | 0-123 | Sentence | denotes | Patient characteristics and setting Facility cases: confirmed case: positive RT‐PCR test result obtained by a throat swab. |
| T956 | 124-275 | Sentence | denotes | Test was repeated when the first test was negativeFacility controls: pneumonia patients confirmed not to be infected by SARS‐Cov2 (2 PCR tests)Country: |
| T957 | 276-287 | Sentence | denotes | ChinaDates: |
| T958 | 288-730 | Sentence | denotes | 19 January 2020‐6 February 2020Symptoms and severity: pneumonia was defined as patients with at least 1 clinical symptom (i.e. cough, sputum, fever, dyspnoea, or pleuritic chest pain), a finding of either coarse crackles on auscultation or elevated inflammatory biomarkers, and observation of a new pulmonary opacification on chest CTDemographics: median age +‐ SD cases 50.36 +‐ 15.5, controls 43.59 +‐ 16.02, gender distribution cases (M/F: |
| T959 | 731-751 | Sentence | denotes | 8/3), controls (M/F: |
| T960 | 752-891 | Sentence | denotes | 7/15)Exposure history: cases 8/11, controls 7/22 (in the last 14 days with patients with fever or respiratory symptoms or with known cases) |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1699 | 0-7 | Species | denotes | Patient | Tax:9606 |
| 1700 | 203-211 | Species | denotes | patients | Tax:9606 |
| 1701 | 244-253 | Species | denotes | SARS‐Cov2 | Tax:2697049 |
| 1702 | 367-375 | Species | denotes | patients | Tax:9606 |
| 1703 | 827-835 | Species | denotes | patients | Tax:9606 |
| 1721 | 193-202 | Disease | denotes | pneumonia | MESH:D011014 |
| 1722 | 232-240 | Disease | denotes | infected | MESH:D007239 |
| 1723 | 342-351 | Disease | denotes | pneumonia | MESH:D011014 |
| 1724 | 415-420 | Disease | denotes | cough | MESH:D003371 |
| 1725 | 430-435 | Disease | denotes | fever | MESH:D005334 |
| 1726 | 437-445 | Disease | denotes | dyspnoea | MESH:D004417 |
| 1727 | 450-470 | Disease | denotes | pleuritic chest pain | MESH:D002637 |
| 1728 | 841-846 | Disease | denotes | fever | MESH:D005334 |
| 1729 | 850-870 | Disease | denotes | respiratory symptoms | MESH:D012818 |