PMC:7386785 / 57262-58494
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T54 | 65-71 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
T55 | 76-82 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T37 | 65-71 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
T38 | 76-82 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T244 | 60-71 | Disease | denotes | sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
T245 | 525-533 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T246 | 630-638 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T247 | 1013-1021 | Disease | denotes | COVID‐19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T369 | 224-225 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T370 | 226-230 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T371 | 260-263 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T73125 | 264-265 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T373 | 396-400 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T374 | 402-407 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Tests |
T375 | 446-447 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T376 | 562-569 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test is |
T377 | 695-698 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T378 | 699-700 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T379 | 760-761 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T380 | 1228-1230 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T147 | 53-58 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
T148 | 60-71 | Phenotype | denotes | sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
T149 | 701-706 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
T150 | 762-767 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T517 | 0-141 | Sentence | denotes | Strikingly, most of the respiratory symptoms such as cough, sore throat and sputum production are below the diagonal in ROC space (Figure 8). |
T518 | 142-401 | Sentence | denotes | The diagonal line in ROC space is where sensitivity equals 1‐specificity, meaning a test that is on the diagonal line has a positive likelihood ratio of 1 and is therefore not diagnostic because disease probability is left unchanged after conducting the test. |
T519 | 402-579 | Sentence | denotes | Tests that lie below the diagonal line have a positive likelihood ratio that is smaller than 1, meaning the probability of COVID‐19 disease decreases when this test is positive. |
T520 | 580-768 | Sentence | denotes | For example, in Sun 2020a, pretest probability of COVID‐19 is 6.9%; probability decreases to 6.4% when the patient has a cough and increases to 8.0% when the patient does not have a cough. |
T521 | 769-858 | Sentence | denotes | We hypothesise on the reason for this counterintuitive finding in the discussion section. |
T522 | 859-1035 | Sentence | denotes | In contrast to respiratory features, systemic features are mostly above the diagonal line (Figure 9), suggesting that they do increase the probability of COVID‐19 when present. |
T523 | 1036-1232 | Sentence | denotes | Gastrointestinal symptoms and cardiovascular features are clustered in the bottom left corner or on the diagonal line suggesting that they have very little diagnostic value (Figure 10; Figure 11). |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
991 | 687-694 | Species | denotes | patient | Tax:9606 |
992 | 738-745 | Species | denotes | patient | Tax:9606 |
993 | 24-44 | Disease | denotes | respiratory symptoms | MESH:D012818 |
994 | 53-58 | Disease | denotes | cough | MESH:D003371 |
995 | 60-71 | Disease | denotes | sore throat | MESH:D010608 |
996 | 525-533 | Disease | denotes | COVID‐19 | MESH:C000657245 |
997 | 630-638 | Disease | denotes | COVID‐19 | MESH:C000657245 |
998 | 701-706 | Disease | denotes | cough | MESH:D003371 |
999 | 762-767 | Disease | denotes | cough | MESH:D003371 |
1000 | 1013-1021 | Disease | denotes | COVID‐19 | MESH:C000657245 |
1001 | 1036-1061 | Disease | denotes | Gastrointestinal symptoms | MESH:D012817 |