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PMC:7386785 / 57262-58494 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T54 65-71 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T55 76-82 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T37 65-71 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T38 76-82 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T244 60-71 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T245 525-533 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T246 630-638 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T247 1013-1021 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T369 224-225 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T370 226-230 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T371 260-263 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T73125 264-265 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T373 396-400 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T374 402-407 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Tests
T375 446-447 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T376 562-569 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test is
T377 695-698 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T378 699-700 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T379 760-761 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T380 1228-1230 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T147 53-58 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T148 60-71 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T149 701-706 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T150 762-767 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T517 0-141 Sentence denotes Strikingly, most of the respiratory symptoms such as cough, sore throat and sputum production are below the diagonal in ROC space (Figure 8).
T518 142-401 Sentence denotes The diagonal line in ROC space is where sensitivity equals 1‐specificity, meaning a test that is on the diagonal line has a positive likelihood ratio of 1 and is therefore not diagnostic because disease probability is left unchanged after conducting the test.
T519 402-579 Sentence denotes Tests that lie below the diagonal line have a positive likelihood ratio that is smaller than 1, meaning the probability of COVID‐19 disease decreases when this test is positive.
T520 580-768 Sentence denotes For example, in Sun 2020a, pretest probability of COVID‐19 is 6.9%; probability decreases to 6.4% when the patient has a cough and increases to 8.0% when the patient does not have a cough.
T521 769-858 Sentence denotes We hypothesise on the reason for this counterintuitive finding in the discussion section.
T522 859-1035 Sentence denotes In contrast to respiratory features, systemic features are mostly above the diagonal line (Figure 9), suggesting that they do increase the probability of COVID‐19 when present.
T523 1036-1232 Sentence denotes Gastrointestinal symptoms and cardiovascular features are clustered in the bottom left corner or on the diagonal line suggesting that they have very little diagnostic value (Figure 10; Figure 11).

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
991 687-694 Species denotes patient Tax:9606
992 738-745 Species denotes patient Tax:9606
993 24-44 Disease denotes respiratory symptoms MESH:D012818
994 53-58 Disease denotes cough MESH:D003371
995 60-71 Disease denotes sore throat MESH:D010608
996 525-533 Disease denotes COVID‐19 MESH:C000657245
997 630-638 Disease denotes COVID‐19 MESH:C000657245
998 701-706 Disease denotes cough MESH:D003371
999 762-767 Disease denotes cough MESH:D003371
1000 1013-1021 Disease denotes COVID‐19 MESH:C000657245
1001 1036-1061 Disease denotes Gastrointestinal symptoms MESH:D012817