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PMC:7386785 / 45430-48655 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T7762 649-655 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T89828 810-816 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T46 1696-1702 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T47 1940-1946 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T48 1995-2001 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T49 2929-2935 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T50 2939-2945 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T27 649-655 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T28 810-816 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T29 1696-1702 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T30 1940-1946 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T31 1995-2001 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T32 2929-2935 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T33 2939-2945 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T181 118-126 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T182 127-136 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T183 196-205 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T184 286-294 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T185 295-304 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T186 372-381 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T187 504-512 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T188 513-522 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T189 614-623 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T190 674-682 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T191 683-692 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T192 835-843 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T193 844-853 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T194 900-909 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T195 1031-1039 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T196 1115-1119 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T197 1242-1250 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T198 1406-1414 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T199 1464-1468 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T200 1591-1599 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T201 1660-1664 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T202 1722-1730 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T203 2020-2028 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T204 2212-2220 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T205 2382-2390 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T206 2464-2468 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T207 2584-2592 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T208 2593-2602 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T209 2660-2669 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T210 2675-2679 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T211 2704-2713 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T212 2719-2728 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T213 2796-2804 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T214 2805-2814 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T215 2872-2881 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T216 2963-2971 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T217 3035-3039 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T218 3166-3170 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T219 3178-3225 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T220 3178-3211 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T303 578-579 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T304 694-697 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T305 1126-1133 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T306 1338-1345 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T307 1453-1459 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T308 1649-1655 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T309 1794-1801 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T310 2235-2237 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T311 2475-2482 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T312 2604-2607 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T313 2816-2818 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T314 2981-2984 http://purl.obolibrary.org/obo/CLO_0001046 denotes 116

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 6-8 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T13 1499-1505 Chemical denotes Cohort http://purl.obolibrary.org/obo/CHEBI_34935

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T95 127-136 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T96 196-205 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T97 295-304 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T98 372-381 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T99 513-522 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T100 580-585 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T101 614-623 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T102 683-692 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T103 748-753 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T104 844-853 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T105 900-909 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T106 928-933 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T107 2593-2602 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T108 2660-2669 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T109 2704-2713 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T110 2805-2814 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T111 2872-2881 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T440 0-107 Sentence denotes Study ID Target condition Sample size Prevalence Setting Population Design Reference standard
T441 108-272 Sentence denotes Ai 2020a COVID‐19 pneumonia 53 38% Hospital inpatientsa Patients hospitalised with pneumonia diagnosed by imaging Cross‐sectional PCR on nasopharyngeal swabs
T442 273-490 Sentence denotes Chen X 2020 COVID‐19 pneumonia 136 Not applicable Hospital inpatientsa Patients admitted with pneumonia Cases selected cross‐sectionally in 5 hospitals, non‐cases from 1 hospital only PCR, samples not specified
T443 491-661 Sentence denotes Cheng 2020a COVID‐19 pneumonia 33 33% Hospital outpatients Patients presenting to a fever observation department with pneumonia Cross‐sectional PCR on throat swabs
T444 662-822 Sentence denotes Feng 2020a COVID‐19 pneumonia 132 5% Emergency department Patients presenting to fever clinic of emergency department Cross‐sectional PCR on throat swabs
T445 823-1018 Sentence denotes Liang 2020 COVID‐19 pneumonia 88 24% Hospital outpatients Patients with pneumonia and presenting to fever clinic Cross‐sectional PCR, sample not specified; conducted after panel discussion
T446 1019-1229 Sentence denotes Nobel 2020 COVID‐19 disease 516 Not applicable Hospital outpatients Patients who underwent SARS‐CoV‐2 testing with intent to hospitalise or in essential personnel Case‐control PCR on nasopharyngeal swabs
T447 1230-1391 Sentence denotes Peng 2020a COVID‐19 disease 86 13% Hospital outpatients Patients clinically suspected and referred for testing Cross‐sectional PCR on nasopharyngeal swabs
T448 1392-1578 Sentence denotes Rentsch 2020 COVID‐19 disease 3789 15% Unclear Patients tested for SARS‐CoV‐2 in the Veterans Affairs Cohort born between 1945 and 1965 Cross‐sectional PCR on nasopharyngeal swabs
T449 1579-1710 Sentence denotes Song 2020b COVID‐19 disease 399 7% Hospital outpatients Patients tested for SARS‐CoV‐2 Cross‐sectional PCR on sputum samples
T450 1711-2007 Sentence denotes Sun 2020a COVID‐19 disease 788 7% Hospital outpatients Patients presenting to testing centre, either self‐referred, referred from primary care or at‐risk cases identified by national contact tracing Cross‐sectional PCR on sputum, endotracheal aspirate, nasopharyngeal swabs or throat swabs
T451 2008-2201 Sentence denotes Tolia 2020 COVID‐19 disease 283 10% Emergency department Patients presenting with symptoms, travel history, risk factors or healthcare workers Cross‐sectional PCR on nasopharyngeal swabs
T452 2202-2370 Sentence denotes Wee 2020 COVID‐19 disease 870 18% Emergency department Patients presenting with respiratory symptoms or travel history Cross‐sectional PCR on oropharyngeal swabs
T453 2371-2571 Sentence denotes Yan 2020a COVID‐19 disease 262 23% Hospital outpatient Patients presenting hospital for SARS‐CoV‐2 testing, not otherwise specified Internet survey after presentation PCR, samples not specified
T454 2572-2783 Sentence denotes Yang 2020d COVID‐19 pneumonia 121 Not applicable Hospital inpatientsa Patient with pneumonia from SARS‐CoV‐2 and patients with pneumonia from influenza in 2015‐2019 Case‐control PCR, samples not specified
T455 2784-2951 Sentence denotes Zhao 2020a COVID‐19 pneumonia 34 Not applicable Hospital inpatientsa Patients with pneumonia and admitted to hospital Case‐control PCR on throat or sputum swabs
T456 2952-3133 Sentence denotes Zhu 2020b COVID‐19 disease 116 28% Emergency department Patients suspected of SARS‐CoV‐2 and presenting to the emergency department Cross‐sectional PCR, samples not specified
T457 3134-3225 Sentence denotes PCR: polymerase chain reaction; SARS‐CoV‐2: severe acute respiratory syndrome coronavirus 2

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
790 169-177 Species denotes Patients Tax:9606
791 349-357 Species denotes Patients Tax:9606
792 477-490 Species denotes not specified Tax:32644
793 555-563 Species denotes Patients Tax:9606
794 725-733 Species denotes Patients Tax:9606
795 886-894 Species denotes Patients Tax:9606
796 971-984 Species denotes not specified Tax:32644
797 1092-1100 Species denotes Patients Tax:9606
798 1115-1125 Species denotes SARS‐CoV‐2 Tax:2697049
799 1291-1299 Species denotes Patients Tax:9606
800 1444-1452 Species denotes Patients Tax:9606
801 1464-1474 Species denotes SARS‐CoV‐2 Tax:2697049
802 1640-1648 Species denotes Patients Tax:9606
803 1660-1670 Species denotes SARS‐CoV‐2 Tax:2697049
804 1771-1779 Species denotes Patients Tax:9606
805 2070-2078 Species denotes Patients Tax:9606
806 2262-2270 Species denotes Patients Tax:9606
807 2419-2429 Species denotes outpatient Tax:9606
808 2431-2439 Species denotes Patients Tax:9606
809 2464-2474 Species denotes SARS‐CoV‐2 Tax:2697049
810 2558-2571 Species denotes not specified Tax:32644
811 2647-2654 Species denotes Patient Tax:9606
812 2675-2685 Species denotes SARS‐CoV‐2 Tax:2697049
813 2690-2698 Species denotes patients Tax:9606
814 2770-2783 Species denotes not specified Tax:32644
815 2858-2866 Species denotes Patients Tax:9606
816 3013-3021 Species denotes Patients Tax:9606
817 3035-3045 Species denotes SARS‐CoV‐2 Tax:2697049
818 3120-3133 Species denotes not specified Tax:32644
819 3166-3176 Species denotes SARS‐CoV‐2 Tax:2697049
820 3178-3225 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
821 118-136 Disease denotes COVID‐19 pneumonia MESH:C000657245
822 196-205 Disease denotes pneumonia MESH:D011014
823 286-304 Disease denotes COVID‐19 pneumonia MESH:C000657245
824 372-381 Disease denotes pneumonia MESH:D011014
825 504-522 Disease denotes COVID‐19 pneumonia MESH:C000657245
826 580-585 Disease denotes fever MESH:D005334
827 614-623 Disease denotes pneumonia MESH:D011014
828 674-692 Disease denotes COVID‐19 pneumonia MESH:C000657245
829 748-753 Disease denotes fever MESH:D005334
830 835-853 Disease denotes COVID‐19 pneumonia MESH:C000657245
831 900-909 Disease denotes pneumonia MESH:D011014
832 928-933 Disease denotes fever MESH:D005334
833 1031-1039 Disease denotes COVID‐19 MESH:C000657245
834 1242-1250 Disease denotes COVID‐19 MESH:C000657245
835 1406-1414 Disease denotes COVID‐19 MESH:C000657245
836 1591-1599 Disease denotes COVID‐19 MESH:C000657245
837 1722-1730 Disease denotes COVID‐19 MESH:C000657245
838 2020-2028 Disease denotes COVID‐19 MESH:C000657245
839 2212-2220 Disease denotes COVID‐19 MESH:C000657245
840 2287-2307 Disease denotes respiratory symptoms MESH:D012818
841 2382-2390 Disease denotes COVID‐19 MESH:C000657245
842 2584-2602 Disease denotes COVID‐19 pneumonia MESH:C000657245
843 2660-2669 Disease denotes pneumonia MESH:D011014
844 2704-2713 Disease denotes pneumonia MESH:D011014
845 2796-2814 Disease denotes COVID‐19 pneumonia MESH:C000657245
846 2872-2881 Disease denotes pneumonia MESH:D011014
847 2963-2971 Disease denotes COVID‐19 MESH:C000657245