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PMC:7386785 / 18582-19888 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T92937 284-288 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T3883 670-675 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T19 284-288 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T20 670-675 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T81 33-41 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T82 67-76 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T83 86-90 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 104-108 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T85 115-124 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T86 341-345 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T87 352-361 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T88 491-500 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T89 567-600 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T90 602-606 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T91 611-646 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T92 617-646 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T93 648-652 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T94 702-710 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T95 711-720 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T96 854-862 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T97 875-883 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 884-893 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T99 986-990 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T100 997-1006 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T101 1040-1048 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T102 1061-1069 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 1070-1079 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T104 1274-1278 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T105 1282-1286 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T16124 97-102 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T48146 210-211 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28209 212-216 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T96981 234-239 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T43667 284-288 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T91028 284-288 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T46041 670-675 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T56931 1179-1180 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3790 1210-1215 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 505-511 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T61 491-500 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T62 617-637 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T63 655-660 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T64 711-720 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T65 884-893 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T66 1070-1079 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T11 143-164 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T12 151-164 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T225 0-32 Sentence denotes Target condition being diagnosed
T226 33-103 Sentence denotes COVID‐19 is the disease caused by infection with the SARS‐CoV‐2 virus.
T227 104-340 Sentence denotes SARS‐CoV‐2 infection is diagnosed with reverse transcription polymerase chain reaction (RT‐PCR), which is a test that detects the virus' genetic material, with imaging to identify lung abnormalities and with clinical signs and symptoms.
T228 341-689 Sentence denotes SARS‐CoV‐2 infection can be asymptomatic (no symptoms); mild or moderate; severe (causing breathlessness and increased respiratory rate indicative of pneumonia and oxygen need); or critical (requiring intensive support due to severe acute respiratory syndrome (SARS) or acute respiratory distress syndrome (ARDS), shock or other organ dysfunction).
T229 690-894 Sentence denotes People with COVID‐19 pneumonia (severe or critical disease), require different patient management, which makes it important to distinguish between mild or moderate COVID‐19 disease and COVID‐19 pneumonia.
T230 895-1080 Sentence denotes In this review, we will examine the diagnostic value of signs and symptoms for symptomatic SARS‐CoV‐2 infection, which includes mild or moderate COVID‐19 disease and COVID‐19 pneumonia.
T231 1081-1201 Sentence denotes In planning review updates, we will consider the potential addition of another grouping, which is a subset of the above:
T232 1202-1306 Sentence denotes whether tests exist that identify people requiring respiratory support (SARS or ARDS) or intensive care.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
425 86-96 Species denotes SARS‐CoV‐2 Tax:2697049
426 33-41 Disease denotes COVID‐19 MESH:C000657245
427 67-76 Disease denotes infection MESH:D007239
428 104-124 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
429 284-302 Disease denotes lung abnormalities MESH:D008171
442 690-696 Species denotes People Tax:9606
443 769-776 Species denotes patient Tax:9606
444 505-511 Chemical denotes oxygen MESH:D010100
445 341-361 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
446 491-500 Disease denotes pneumonia MESH:D011014
447 611-646 Disease denotes acute respiratory distress syndrome MESH:D012128
448 648-652 Disease denotes ARDS MESH:D012128
449 655-660 Disease denotes shock MESH:D012769
450 670-687 Disease denotes organ dysfunction MESH:D009102
451 702-720 Disease denotes COVID‐19 pneumonia MESH:C000657245
452 854-862 Disease denotes COVID‐19 MESH:C000657245
453 875-893 Disease denotes COVID‐19 pneumonia MESH:C000657245
457 986-1006 Disease denotes SARS‐CoV‐2 infection MESH:C000657245
458 1040-1048 Disease denotes COVID‐19 MESH:C000657245
459 1061-1079 Disease denotes COVID‐19 pneumonia MESH:C000657245
462 1236-1242 Species denotes people Tax:9606
463 1282-1286 Disease denotes ARDS MESH:D012128