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PMC:7377212 / 2704-3935 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T50 144-296 NCBITaxon:11118 denotes course of COVID-19 shows many features that are shared with severe influenza infection. These include ARDS, lymphopenia, bilateral pulmonary infiltrates
T75354 21-30 UBERON:0002048 denotes pulmonary

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 324-332 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T6 374-379 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 374-379 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
99 21-44 Disease denotes pulmonary aspergillosis MESH:D055732

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T51 0-9 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T52 31-44 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T53 109-118 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T54 154-162 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 211-230 Disease denotes influenza infection http://purl.obolibrary.org/obo/MONDO_0005812
T56 221-230 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T57 246-250 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T58 252-263 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T59 365-387 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726
T60 462-470 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 503-525 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T62 512-525 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T63 627-635 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T64 698-702 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T65 714-736 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T66 723-736 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T67 834-842 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 889-893 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T69 1064-1072 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 1169-1173 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T22 61-62 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 374-379 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T24 786-789 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 977-978 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 1091-1092 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 743-757 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T4 1022-1035 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879

MyTest

Id Subject Object Predicate Lexical cue
32703771-22895826-29390903 120-122 22895826 denotes 12
32703771-30076119-29390903 120-122 30076119 denotes 12
32703771-28387526-29390903 120-122 28387526 denotes 12
32703771-28387526-29390904 389-391 28387526 denotes 14
32703771-27704024-29390905 393-395 27704024 denotes 15
32703771-12890854-29390906 763-764 12890854 denotes 5
32703771-32171076-29390907 844-845 32171076 denotes 1

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T17 0-231 Sentence denotes Influenza-associated pulmonary aspergillosis (IAPA) presents a known risk to critically unwell patients with influenza [12–14] and the clinical course of COVID-19 shows many features that are shared with severe influenza infection.
T18 232-397 Sentence denotes These include ARDS, lymphopenia, bilateral pulmonary infiltrates, systemic pro-inflammatory cytokine responses and sepsis leading to multiple organ failure [14, 15].
T19 398-526 Sentence denotes It is therefore reasonable to suspect that patients with severe COVID-19 may be similarly susceptible to invasive aspergillosis.
T20 527-766 Sentence denotes Corticosteroid use is an important acquired immunological risk factor for IAPA [16] and, during the SARS-CoV 2003 epidemic, there were case reports of patients developing SARS-associated invasive aspergillosis after corticosteroid use [5].
T21 767-894 Sentence denotes Corticosteroid use has been reported in hospitalised patients with COVID-19 [1] and may further contribute to the risk of CAPA.
T22 895-1231 Sentence denotes Importantly, the recent finding by the UK RECOVERY trial (ISRCTN50189673) [17] of a one-third mortality reduction conferred by dexamethasone in ventilated patients with COVID-19, while leading to a crucial new therapeutic avenue, may increase the risk of patients acquiring CAPA and emphasises the need for enhanced fungal surveillance.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 252-263 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T6 275-296 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T7 347-353 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806

2_test

Id Subject Object Predicate Lexical cue
32703771-22895826-29390903 120-122 22895826 denotes 12
32703771-30076119-29390903 120-122 30076119 denotes 12
32703771-28387526-29390903 120-122 28387526 denotes 12
32703771-28387526-29390904 389-391 28387526 denotes 14
32703771-27704024-29390905 393-395 27704024 denotes 15
32703771-12890854-29390906 763-764 12890854 denotes 5
32703771-32171076-29390907 844-845 32171076 denotes 1