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PMC:7377212 / 2699-15018 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T50 149-301 NCBITaxon:11118 denotes course of COVID-19 shows many features that are shared with severe influenza infection. These include ARDS, lymphopenia, bilateral pulmonary infiltrates
T50878 0-14 NCBITaxon:11118 denotes CAPA Influenza
T75354 26-35 UBERON:0002048 denotes pulmonary

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 329-337 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T6 379-384 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T7 1645-1649 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T8 1770-1774 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T9 1775-1779 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T10 2452-2457 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T11 3069-3077 Body_part denotes cavities http://purl.org/sig/ont/fma/fma76576
T12 4128-4133 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T13 4352-4357 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T14 4543-4548 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T15 4777-4782 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T16 5072-5077 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T17 5205-5210 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T18 5421-5425 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T19 5484-5489 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T20 5754-5759 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T21 5970-5975 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T22 6203-6208 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T23 6496-6501 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T24 7328-7331 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T25 7468-7473 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T26 8166-8172 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T27 8173-8186 Body_part denotes left bronchus http://purl.org/sig/ont/fma/fma7396
T28 8687-8695 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T29 8906-8922 Body_part denotes right upper lobe http://purl.org/sig/ont/fma/fma7333
T30 8999-9003 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T31 9030-9036 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T32 9244-9248 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T33 9408-9413 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T34 9964-9968 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T35 9969-9973 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T36 11025-11030 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T37 11894-11899 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T38 12021-12027 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T7 379-384 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062
T8 1645-1649 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 1775-1779 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 2452-2457 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T11 4128-4133 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T12 4352-4357 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 4543-4548 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T14 4777-4782 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T15 5072-5077 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T16 5205-5210 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T17 5421-5425 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T18 5484-5489 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T19 5754-5759 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T20 5970-5975 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T21 6203-6208 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T22 6496-6501 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 7468-7473 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T24 8166-8172 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T25 8178-8186 Body_part denotes bronchus http://purl.obolibrary.org/obo/UBERON_0002185
T26 8668-8685 Body_part denotes Pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T27 8918-8922 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T28 8999-9003 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T29 9030-9036 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T30 9244-9248 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T31 9408-9413 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T32 9969-9973 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T33 11025-11030 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T34 11894-11899 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T35 12021-12027 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
99 26-49 Disease denotes pulmonary aspergillosis MESH:D055732
151 1267-1274 Species denotes patient Tax:9606
152 1918-1926 Species denotes patients Tax:9606
153 2022-2030 Species denotes patients Tax:9606
154 2119-2127 Species denotes patients Tax:9606
155 1598-1606 Disease denotes diabetes MESH:D003920
156 1645-1657 Disease denotes lung disease MESH:D008171
157 1659-1663 Disease denotes COPD MESH:D029424
158 1671-1677 Disease denotes asthma MESH:D001249
159 1693-1702 Disease denotes emphysema MESH:D004646
160 1710-1728 Disease denotes pulmonary fibrosis MESH:D011658
161 1775-1786 Disease denotes lung cancer MESH:D008175
162 1931-1935 Disease denotes died MESH:D003643
163 1969-1978 Disease denotes mortality MESH:D003643
164 2036-2044 Disease denotes COVID-19 MESH:C000657245
165 2132-2136 Disease denotes died MESH:D003643
269 2689-2701 Species denotes A. fumigatus Tax:746128
270 2726-2738 Species denotes A. fumigatus Tax:746128
271 2886-2898 Species denotes A. fumigatus Tax:746128
272 3101-3113 Species denotes A. fumigatus Tax:746128
273 3135-3147 Species denotes A. fumigatus Tax:746128
274 3341-3353 Species denotes A. fumigatus Tax:746128
275 3368-3380 Species denotes A. fumigatus Tax:746128
276 3775-3787 Species denotes A. fumigatus Tax:746128
277 3941-3953 Species denotes A. fumigatus Tax:746128
278 4060-4072 Species denotes A. fumigatus Tax:746128
279 4090-4102 Species denotes A. fumigatus Tax:746128
281 8705-8717 Species denotes ion, ground- Tax:746128
282 5104-5116 Species denotes Paris, Franc Tax:746128
283 5381-5393 Species denotes 1 days 6–10 Tax:746128
284 5648-5660 Species denotes –5, 10 mg·da Tax:746128
285 5870-5882 Species denotes y−1 days 1–5 Tax:746128
286 6116-6129 Species denotes ds Typical CO Tax:746128
287 6463-6475 Species denotes e bilateral Tax:746128
288 6753-6765 Species denotes e Died Antwe Tax:746128
289 6883-6895 Species denotes Antwerp, Bel Tax:746128
290 7010-7022 Species denotes erp, Belgium Tax:746128
291 7185-7199 Species denotes ids for pemphi Tax:746128
292 7525-7537 Species denotes AML with IPA Tax:746128
293 7686-7698 Species denotes rdiomyopathy Tax:746128
294 7952-7964 Species denotes ·day−1×2 day Tax:746128
295 8110-8122 Species denotes oderate COPD Tax:746128
296 8408-8420 Species denotes oids NR A. f Tax:746128
297 8529-8541 Species denotes ND A. fumig Tax:746128
298 8972-8984 Species denotes A. fumigatus Tax:746128
299 9041-9052 Species denotes Aspergillus Tax:746128
300 8732-8744 Species denotes , pulmonary Tax:746128
301 5414-5426 Species denotes mental lung Tax:746128
302 5685-5697 Species denotes VID-19”, emp Tax:746128
303 5903-5916 Species denotes 10 Typical CO Tax:746128
304 6144-6156 Species denotes ipheral nodu Tax:746128
305 6295-6302 Chemical denotes d Graz, MESH:D013256
306 7720-7727 Chemical denotes (-) 3 MESH:D013256
307 9184-9191 Chemical denotes steroid MESH:D013256
308 2595-2599 Disease denotes COPD MESH:D029424
309 2769-2773 Disease denotes Died MESH:D003643
310 2928-2932 Disease denotes Died MESH:D003643
311 2960-2968 Disease denotes Diabetes MESH:D003920
312 3229-3238 Disease denotes emphysema MESH:D004646
313 3247-3251 Disease denotes COPD MESH:D029424
314 3328-3340 Disease denotes emphysema ND MESH:C537849
315 3450-3454 Disease denotes Died MESH:D003643
316 3689-3707 Disease denotes Pulmonary fibrosis MESH:D011658
317 3726-3744 Disease denotes COVID-19 pneumonia MESH:C000657245
318 3838-3842 Disease denotes Died MESH:D003643
319 3892-3910 Disease denotes COVID-19 pneumonia MESH:C000657245
320 4000-4004 Disease denotes Died MESH:D003643
321 4029-4053 Disease denotes Myelodysplastic syndrome MESH:D009190
322 4216-4220 Disease denotes Died MESH:D003643
323 5401-5409 Disease denotes COVID-19 MESH:C000657245
326 8692-8700 Disease denotes lar cond MESH:C000657245
327 4831-4841 Disease denotes if TA con MESH:D003920
328 4905-4913 Disease denotes etes, de MESH:C000657245
329 5029-5033 Disease denotes 5 NR MESH:D003643
330 5094-5102 Disease denotes None Die MESH:C000657245
331 5271-5279 Disease denotes ture (+) MESH:D003920
332 5343-5351 Disease denotes methason MESH:C000657245
333 5627-5635 Disease denotes ne 20 mg MESH:C000657245
334 5638-5647 Disease denotes y−1 days MESH:D004646
335 5755-5759 Disease denotes erum MESH:D003643
336 5786-5796 Disease denotes host fact MESH:D003920
337 5860-5868 Disease denotes e 20 mg· MESH:C000657245
338 6014-6018 Disease denotes Put MESH:D003643
339 6047-6054 Disease denotes ) but B MESH:D009101
340 6080-6088 Disease denotes ance [9] MESH:C000657245
341 6247-6251 Disease denotes only MESH:D003643
342 6289-6293 Disease denotes ne D MESH:D029424
343 6312-6336 Disease denotes 20] 70 M Moderate COPD, MESH:D012893
344 6338-6346 Disease denotes eroid in MESH:D003920
345 6571-6575 Disease denotes or P MESH:D003643
346 6621-6630 Disease denotes L V Died MESH:C537849
347 6706-6710 Disease denotes ive MESH:D003643
348 6871-6879 Disease denotes V, I Al MESH:D003920
349 6962-6966 Disease denotes om b MESH:D003643
350 6998-7006 Disease denotes V Died MESH:D003920
351 7125-7133 Disease denotes ive Antw MESH:D003920
352 7468-7472 Disease denotes seru MESH:D003643
353 7504-7507 Disease denotes rp, MESH:D015470
354 7581-7585 Disease denotes st f MESH:D003643
355 7665-7679 Disease denotes ·day−1×28 days MESH:D009202
356 7830-7834 Disease denotes to MESH:D003643
357 7879-7883 Disease denotes [10 MESH:D029424
358 7897-7902 Disease denotes COPD, MESH:D002289
359 8051-8055 Disease denotes o BA MESH:D003643
360 8102-8106 Disease denotes ] 75 MESH:D029424
361 8227-8231 Disease denotes e V+ MESH:D003643
362 8476-8480 Disease denotes r L- MESH:D003643
363 8668-8685 Disease denotes Pleural effusions MESH:D010996
364 8734-8752 Disease denotes pulmonary cysts ND MESH:C537849
365 8756-8768 Disease denotes flavus ND ND MESH:C537849
366 8841-8845 Disease denotes Died MESH:D003643
367 8869-8877 Disease denotes Diabetes MESH:D003920
368 9080-9084 Disease denotes Died MESH:D003643
371 9244-9256 Disease denotes lung disease MESH:D008171
374 2253-2287 Disease denotes coronavirus disease 2019 (COVID-19 MESH:C000657245
375 2300-2323 Disease denotes pulmonary aspergillosis MESH:D055732
415 10210-10217 Species denotes patient Tax:9606
416 10243-10254 Disease denotes neutropenia MESH:D009503
417 10271-10281 Disease denotes malignancy MESH:D009369
424 9587-9619 Disease denotes invasive pulmonary aspergillosis MESH:D055744
474 10501-10509 Species denotes patients Tax:9606
475 11533-11541 Species denotes patients Tax:9606
476 11696-11704 Species denotes patients Tax:9606
477 12218-12226 Species denotes patients Tax:9606
478 10911-10922 Species denotes Aspergillus Tax:746128
479 11547-11558 Species denotes aspergillus Tax:746128
480 11003-11016 Chemical denotes galactomannan MESH:C012990
481 11018-11020 Chemical denotes GM MESH:C012990
482 11378-11395 Disease denotes tracheobronchitis
483 12232-12240 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T50 0-4 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T51 5-14 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T52 36-49 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T53 114-123 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T54 159-167 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 216-235 Disease denotes influenza infection http://purl.obolibrary.org/obo/MONDO_0005812
T56 226-235 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T57 251-255 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T58 257-268 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T59 370-392 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726
T60 467-475 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T61 508-530 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T62 517-530 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T63 632-640 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T64 703-707 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T65 719-741 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T66 728-741 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T67 839-847 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T68 894-898 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T69 1069-1077 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T70 1174-1178 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T71 1301-1305 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T72 1486-1492 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T73 1598-1606 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T74 1645-1657 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T75 1659-1663 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T76 1671-1677 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T77 1693-1702 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T78 1710-1728 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T79 1761-1786 Disease denotes nonsmall-cell lung cancer http://purl.obolibrary.org/obo/MONDO_0005233
T80 1775-1786 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T81 1780-1786 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T82 1794-1798 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T83 2036-2044 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T84 2253-2277 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T85 2279-2287 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 2310-2323 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T87 2434-2436 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T88 2595-2599 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T89 2960-2968 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T90 3229-3238 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T91 3247-3251 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T92 3328-3337 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T93 3361-3363 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T94 3416-3418 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T95 3614-3616 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T96 3689-3707 Disease denotes Pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T97 3726-3734 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 3735-3744 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T99 3892-3900 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 3901-3910 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T101 4029-4053 Disease denotes Myelodysplastic syndrome http://purl.obolibrary.org/obo/MONDO_0018881|http://purl.obolibrary.org/obo/MONDO_0044873
T103 4083-4085 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T104 4107-4109 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T105 4179-4181 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T106 4310-4318 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T107 4480-4488 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T108 4497-4505 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T109 4724-4732 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T110 4756-4758 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T111 4835-4837 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T112 4901-4909 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T113 4977-4985 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T114 5127-5133 Disease denotes Asthma http://purl.obolibrary.org/obo/MONDO_0004979
T115 5159-5167 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T116 5329-5337 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T117 5401-5409 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T118 5608-5614 Disease denotes Asthma http://purl.obolibrary.org/obo/MONDO_0004979
T119 5683-5691 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T120 5694-5703 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T121 5838-5846 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T122 5914-5922 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T123 6094-6101 Disease denotes Myeloma http://purl.obolibrary.org/obo/MONDO_0005170|http://purl.obolibrary.org/obo/MONDO_0009693
T125 6127-6135 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T126 6182-6184 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T127 6255-6257 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T128 6330-6334 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T129 6379-6387 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T130 6537-6539 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T131 6591-6593 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T132 6718-6720 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T133 6909-6917 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T134 7032-7040 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T135 7155-7163 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T136 7193-7202 Disease denotes pemphigus http://purl.obolibrary.org/obo/MONDO_0006594
T137 7525-7528 Disease denotes AML http://purl.obolibrary.org/obo/MONDO_0018874
T138 7684-7698 Disease denotes cardiomyopathy http://purl.obolibrary.org/obo/MONDO_0004994
T139 7806-7808 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T140 7897-7901 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T141 7915-7920 Disease denotes NSCLC http://purl.obolibrary.org/obo/MONDO_0005233
T142 8025-8027 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T143 8118-8122 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T144 8388-8394 Disease denotes Asthma http://purl.obolibrary.org/obo/MONDO_0004979
T145 8587-8589 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T146 8804-8806 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T147 8869-8877 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T148 9214-9222 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T149 9244-9256 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T150 9606-9619 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T151 9650-9652 Disease denotes TA http://purl.obolibrary.org/obo/MONDO_0017991
T152 9751-9757 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T153 9900-9903 Disease denotes AML http://purl.obolibrary.org/obo/MONDO_0018874
T154 9948-9953 Disease denotes NSCLC http://purl.obolibrary.org/obo/MONDO_0005233
T155 9955-9980 Disease denotes nonsmall-cell lung cancer http://purl.obolibrary.org/obo/MONDO_0005233
T156 9969-9980 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T157 9974-9980 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T158 10243-10254 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T159 10441-10454 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T160 11091-11095 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T161 11336-11358 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T162 11345-11358 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T163 11378-11395 Disease denotes tracheobronchitis http://purl.obolibrary.org/obo/MONDO_0021925
T164 11482-11486 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T165 11656-11660 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T166 12232-12240 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T167 12293-12297 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T22 66-67 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 379-384 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T24 791-794 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T25 982-983 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 1096-1097 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 1432-1433 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 1443-1455 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T29 1527-1529 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T30 1617-1619 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T31 1645-1649 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T32 1645-1649 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T33 1770-1774 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T34 1775-1779 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T35 1775-1779 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T36 1813-1814 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 2049-2050 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 2566-2568 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T39 2689-2690 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 2726-2727 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T41 2792-2794 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T42 2886-2887 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T43 2951-2953 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T44 3069-3077 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavities
T45 3101-3102 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T46 3135-3136 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T47 3204-3206 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T48 3341-3342 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T49 3368-3369 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T50 3473-3475 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T51 3680-3682 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T52 3775-3776 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T53 3832-3837 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T54 3860-3862 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T55 3941-3942 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T56 3994-3999 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T57 4060-4061 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T58 4090-4091 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T59 4506-4507 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T60 4736-4737 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T61 4763-4764 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T62 5119-5124 http://purl.obolibrary.org/obo/CLO_0001533 denotes 9] 43
T63 5168-5169 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T64 5421-5425 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T65 5421-5425 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T66 5438-5439 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T67 5470-5471 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T68 5704-5705 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T69 5740-5741 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T70 5923-5924 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T71 5956-5957 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T72 6162-6163 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T73 6189-6190 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T74 6496-6501 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T75 6517-6518 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T76 6667-6668 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T77 6795-6796 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T78 6901-6906 http://purl.obolibrary.org/obo/CLO_0050053 denotes 8] 62
T79 6921-6922 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T80 7044-7045 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T81 7217-7218 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T82 7333-7336 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T83 7517-7522 http://purl.obolibrary.org/obo/CLO_0050040 denotes 8] 75
T84 7546-7547 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T85 7705-7706 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T86 7718-7726 http://purl.obolibrary.org/obo/CLO_0008143 denotes ND (-) 3
T87 7840-7841 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T88 7846-7851 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T89 7972-7973 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T90 7988-7992 http://purl.obolibrary.org/obo/CLO_0008143 denotes ND 3
T91 8059-8060 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T92 8065-8070 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T93 8126-8127 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T94 8178-8186 http://purl.obolibrary.org/obo/UBERON_0002185 denotes bronchus
T95 8231-8232 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T96 8237-8242 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T97 8337-8338 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T98 8343-8348 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T99 8416-8417 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T100 8472-8473 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T101 8478-8483 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T102 8533-8534 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T103 8621-8622 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T104 8627-8632 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T105 8668-8685 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusions
T106 8753-8754 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T107 8860-8862 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T108 8972-8973 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T109 8999-9003 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T110 8999-9003 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T111 9074-9079 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T112 9208-9210 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T113 9244-9248 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T114 9244-9248 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T115 9263-9265 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T116 9290-9296 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavity
T117 9338-9340 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T118 9487-9489 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T119 9515-9517 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T120 9708-9720 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T121 9805-9809 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T122 9805-9809 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T123 9814-9820 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T124 9875-9881 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T125 9964-9968 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T126 9969-9973 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T127 9969-9973 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T128 10035-10040 http://purl.obolibrary.org/obo/NCBITaxon_9940 denotes L-AmB
T129 10065-10066 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T130 10084-10085 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T131 10208-10209 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 10411-10412 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 10943-10944 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 11122-11124 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T135 11256-11257 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 11682-11684 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T137 11772-11773 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T138 11892-11893 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T139 12011-12012 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 748-762 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T4 1027-1040 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T5 1568-1583 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T6 2395-2398 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T8 2422-2425 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T9 2434-2436 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T10 2445-2448 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T11 2449-2451 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T13 2458-2460 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T15 2609-2617 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T16 2702-2704 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T17 2718-2721 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T18 2739-2741 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T19 2858-2860 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T20 2878-2881 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T21 2899-2901 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T22 3127-3130 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T23 3148-3150 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T24 3261-3269 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T25 3338-3340 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T26 3354-3356 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T27 3361-3363 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T28 3381-3383 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T29 3416-3418 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T30 3444-3447 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T31 3591-3593 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T32 3598-3600 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T33 3614-3616 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T34 3625-3627 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T35 3771-3774 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T37 3788-3790 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T38 3937-3940 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T40 3954-3956 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T41 4054-4056 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T42 4057-4059 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T43 4073-4075 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T44 4083-4085 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T45 4107-4109 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T46 4110-4112 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T48 4179-4181 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T49 4207-4210 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T50 4244-4257 Chemical denotes Dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T51 4323-4325 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T52 4339-4342 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T53 4380-4382 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T54 4415-4418 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T55 4419-4421 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T57 4519-4521 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T58 4530-4533 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T59 4557-4559 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T60 4593-4596 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T61 4613-4616 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T62 4617-4619 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T64 4658-4671 Chemical denotes Dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T65 4733-4735 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T66 4749-4751 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T67 4756-4758 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T68 4800-4802 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T69 4835-4837 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T70 4863-4866 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T71 4911-4924 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T72 4990-4992 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T73 5006-5009 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T74 5031-5033 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T75 5078-5080 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T77 5135-5150 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T78 5181-5183 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T79 5192-5195 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T80 5228-5230 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T81 5264-5267 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T82 5284-5287 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T83 5288-5290 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T85 5339-5352 Chemical denotes Dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T86 5451-5453 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T87 5462-5465 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T88 5507-5509 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T89 5543-5546 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T90 5563-5566 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T91 5567-5569 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T93 5616-5629 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T94 5717-5719 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T95 5732-5735 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T96 5781-5783 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T97 5848-5861 Chemical denotes dexamethasone http://purl.obolibrary.org/obo/CHEBI_41879
T98 5936-5938 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T99 5947-5950 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T100 5997-5999 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T101 6033-6036 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T102 6053-6056 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T103 6057-6059 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T105 6103-6118 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T106 6159-6161 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T107 6175-6177 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T108 6182-6184 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T109 6226-6228 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T110 6255-6257 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T111 6283-6286 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T112 6336-6343 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T113 6514-6516 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T114 6530-6532 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T115 6537-6539 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T116 6540-6543 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T117 6591-6593 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T118 6619-6622 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T119 6661-6663 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T120 6664-6666 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T121 6677-6679 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T122 6718-6720 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T123 6746-6749 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T124 6808-6810 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T125 6918-6920 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T126 6934-6936 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T127 7041-7043 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T128 7057-7059 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T129 7173-7188 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T130 7214-7216 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T131 7230-7232 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T132 7373-7375 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T133 7380-7382 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T134 7474-7476 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T136 7534-7537 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T138 7543-7545 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T139 7559-7561 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T140 7571-7573 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T141 7699-7701 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T142 7702-7704 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T143 7718-7720 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T144 7739-7746 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T145 7806-7808 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T146 7834-7837 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T147 7927-7939 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T148 7966-7968 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T149 7969-7971 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T150 7985-7987 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T151 7988-7990 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T152 8025-8027 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T153 8053-8056 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T154 8123-8125 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T155 8139-8141 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T156 8150-8152 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T157 8286-8288 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T158 8293-8295 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T159 8404-8412 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T160 8413-8415 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T161 8429-8431 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T162 8527-8529 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T163 8530-8532 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T164 8546-8548 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T165 8549-8551 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T166 8587-8589 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T167 8615-8618 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T168 8750-8752 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T169 8763-8765 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T170 8766-8768 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T171 8769-8771 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T172 8804-8806 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T173 8832-8835 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T174 8985-8987 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T175 8988-8990 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T176 9019-9021 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T179 9027-9029 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T182 9184-9191 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T183 9346-9349 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T184 9376-9379 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T185 9380-9382 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T187 9414-9416 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T189 9582-9585 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T191 9621-9624 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T192 9650-9652 Chemical denotes TA http://purl.obolibrary.org/obo/CHEBI_74824
T193 9673-9675 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T195 9677-9690 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T196 9797-9800 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T198 9805-9809 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T199 9837-9843 Chemical denotes glucan http://purl.obolibrary.org/obo/CHEBI_37163
T200 9845-9848 Chemical denotes LFD http://purl.obolibrary.org/obo/CHEBI_73571
T201 9883-9885 Chemical denotes PM http://purl.obolibrary.org/obo/CHEBI_141444|http://purl.obolibrary.org/obo/CHEBI_16410|http://purl.obolibrary.org/obo/CHEBI_53551
T204 9982-9984 Chemical denotes NR http://purl.obolibrary.org/obo/CHEBI_145751
T205 10003-10015 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T206 10020-10033 Chemical denotes isavuconazole http://purl.obolibrary.org/obo/CHEBI_85979
T207 10052-10066 Chemical denotes amphotericin B http://purl.obolibrary.org/obo/CHEBI_2682
T208 10071-10082 Chemical denotes caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T209 10087-10100 Chemical denotes anidulafungin http://purl.obolibrary.org/obo/CHEBI_55346
T210 10102-10104 Chemical denotes ND http://purl.obolibrary.org/obo/CHEBI_73419
T211 10204-10207 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T213 10337-10352 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T214 10978-10981 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T215 11003-11016 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T216 11018-11020 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T218 11031-11034 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T219 11289-11292 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T220 11719-11722 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T221 11774-11777 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T222 11778-11780 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T224 11866-11869 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T225 11900-11902 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T227 11950-11953 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T228 11979-11982 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T229 11983-11985 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T231 12092-12103 Chemical denotes antifungals http://purl.obolibrary.org/obo/CHEBI_35718

MyTest

Id Subject Object Predicate Lexical cue
32703771-22895826-29390903 125-127 22895826 denotes 12
32703771-30076119-29390903 125-127 30076119 denotes 12
32703771-28387526-29390903 125-127 28387526 denotes 12
32703771-28387526-29390904 394-396 28387526 denotes 14
32703771-27704024-29390905 398-400 27704024 denotes 15
32703771-12890854-29390906 768-769 12890854 denotes 5
32703771-32171076-29390907 849-850 32171076 denotes 1
32703771-22517788-29390908 10719-10721 22517788 denotes 24
32703771-30076119-29390909 10764-10766 30076119 denotes 13
32703771-32445626-29390910 11626-11627 32445626 denotes 9

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 6365-6370 http://purl.obolibrary.org/obo/GO_0030431 denotes sleep

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 2449-2451 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T2 2458-2460 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T3 4110-4112 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T4 4419-4421 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T5 4617-4619 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T6 5078-5080 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T7 5288-5290 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T8 5567-5569 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T9 6057-6059 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T10 7474-7476 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T11 9380-9382 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T12 9414-9416 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T13 9673-9675 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T14 9677-9690 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T15 11003-11016 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T16 11018-11020 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T17 11778-11780 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T18 11900-11902 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T19 11983-11985 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T16 0-4 Sentence denotes CAPA
T17 5-236 Sentence denotes Influenza-associated pulmonary aspergillosis (IAPA) presents a known risk to critically unwell patients with influenza [12–14] and the clinical course of COVID-19 shows many features that are shared with severe influenza infection.
T18 237-402 Sentence denotes These include ARDS, lymphopenia, bilateral pulmonary infiltrates, systemic pro-inflammatory cytokine responses and sepsis leading to multiple organ failure [14, 15].
T19 403-531 Sentence denotes It is therefore reasonable to suspect that patients with severe COVID-19 may be similarly susceptible to invasive aspergillosis.
T20 532-771 Sentence denotes Corticosteroid use is an important acquired immunological risk factor for IAPA [16] and, during the SARS-CoV 2003 epidemic, there were case reports of patients developing SARS-associated invasive aspergillosis after corticosteroid use [5].
T21 772-899 Sentence denotes Corticosteroid use has been reported in hospitalised patients with COVID-19 [1] and may further contribute to the risk of CAPA.
T22 900-1236 Sentence denotes Importantly, the recent finding by the UK RECOVERY trial (ISRCTN50189673) [17] of a one-third mortality reduction conferred by dexamethasone in ventilated patients with COVID-19, while leading to a crucial new therapeutic avenue, may increase the risk of patients acquiring CAPA and emphasises the need for enhanced fungal surveillance.
T23 1237-1338 Sentence denotes Table 1 summarises individual patient-level data in 33 cases of CAPA that have been reported to date.
T24 1339-1513 Sentence denotes The median (interquartile range) age of cases is 70 (57–75) years, of whom only two (6%) had a European Organization for Research and Treatment of Cancer (EORTC) host factor.
T25 1514-1793 Sentence denotes Of these 16 (48%) had exposure to inhaled or systemic corticosteroids, 10 (30%) had diabetes and nine (27%) had underlying chronic lung disease; COPD (n=5), asthma (n=3), bullous emphysema (n=1), pulmonary fibrosis (n=1) and post-radiotherapy for nonsmall-cell lung cancer (n=1).
T26 1794-1963 Sentence denotes CAPA was diagnosed a median (interquartile range) 5.5 (4.3–9) days after intensive care unit (ICU) admission and 21 (63.6%) patients had died by the time of publication.
T27 1964-2215 Sentence denotes This mortality is in excess of most cohorts of ventilated patients with COVID-19, as a comparison in the UK ISARIC cohort 618 (37%) out of 1658 ventilated patients had died by the time of publication (17% discharged and 46% still receiving care) [23].
T28 2216-2364 Sentence denotes TABLE 1 Summary of reported cases of coronavirus disease 2019 (COVID-19) associated pulmonary aspergillosis in the intensive care unit (ICU) setting
T29 2365-2547 Sentence denotes Location [ref.] Age years Sex IPA risk factors Radiology BAL culture TA culture BAL GM Serum GM Other diagnostics Onset days post-ICU EORTC status Mod AspICU status Treatment Outcome
T30 2548-2773 Sentence denotes Cologne, Germany [11] 62 F Ex-smoker, moderate COPD, inhaled steroids Ground-glass opacities, crazy paving, peripheral nodular consolidation A. fumigatus NR (+) >2.5 (-) BAL PCR A. fumigatus NR No host factor# Putative V Died
T31 2774-2932 Sentence denotes Cologne, Germany [11] 70 M Ex-smoker Ground-glass opacities, occasional nodules (-) NR (+) >2.5 (+) 0.7 BAL PCR A. fumigatus NR No host factor Putative I Died
T32 2933-3185 Sentence denotes Cologne, Germany [11] 54 M Diabetes, systemic corticosteroids0.4 mg·kg−1·day−1×13 days Ground-glass opacities, nodular infiltrates with cavities, air crescent sign (-) A. fumigatus (+) >2.5 (-) BAL PCR A. fumigatus NR No host factor Putative C, V Alive
T33 3186-3454 Sentence denotes Cologne, Germany [11] 73 M Smoker, bullous emphysema, severe COPD, inhaled steroids Ground-glass opacities, occasional nodules, known bullous emphysema ND A. fumigatus ND (-) TA PCR A. fumigatus NR No host factor Putative only if TA considered equivalent to BAL V Died
T34 3455-3662 Sentence denotes Cologne, Germany [11] 54 F None Ground-glass opacities, crazy paving, central and peripheral consolidation, smaller nodular infiltrates ND (-) ND (+) 2.7, 1.3 TA PCR (-) NR No host factor Putative C, V Alive
T35 3663-3842 Sentence denotes Munich, Germany [18] 80 M Pulmonary fibrosis Typical signs for COVID-19 pneumonia but no specific signs for IPA A. fumigatus NR (+) >6 (+) 1.5 5 No host factor Putative L-AmB Died
T36 3843-4004 Sentence denotes Munich, Germany [18] 70 M None Typical signs for COVID-19 pneumonia but no specific signs for IPA A. fumigatus NR (+) >6 (-) 6 No host factor Putative L-AmB Died
T37 4005-4220 Sentence denotes Paris, France [19] 74 M Myelodysplastic syndrome NR ND A. fumigatus ND (-) x2 TA PCR A. fumigatus x2, TA GM (-)×1, BDG and serum PCR (-) x2 4 No host factor Putative only if TA considered equivalent to BAL None Died
T38 4221-4456 Sentence denotes Paris, France [9] 53 M Dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 Typical COVID-19 (-) NR (-) 0.89 (-) BAL PCR (-), Serum PCR (-), BDG (+) >500 NR No host factor Putative only if BAL GM cut-off lowered to >0.8 None Alive
T39 4457-4634 Sentence denotes Paris, France [9] 59 F Diabetes Typical COVID-19 A. fumigatus NR (-) (-) BAL PCR (-), serum PCR (-) NR No host factor Putative but note BAL culture (+) but BAL GM (-) None Alive
T40 4635-4877 Sentence denotes Paris, France [9] 69 F Dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 Typical COVID-19 ND A. fumigatus ND (-) TA PCR A. fumigatus, serum PCR (-), BDG (-) NR No host factor Putative only if TA considered equivalent to BAL None Alive
T41 4878-5103 Sentence denotes Paris, France [9] 63 F Diabetes, dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 Typical COVID-19 (-) NR (-) (+) 0.51 BAL PCR (-), BDG (+) 105 NR No host factor Putative but relies on serum GM of only 0.51 None Died
T42 5104-5305 Sentence denotes Paris, France [9] 43 M Asthma, corticosteroids Typical COVID-19 A. fumigatus NR (-) (-) BAL PCR (-), serum PCR (-), BDG (-) NR No host factor Putative but note BAL culture (+) but BAL GM (-) None Alive
T43 5306-5584 Sentence denotes Paris, France [9] 79 M Diabetes, Dexamethasone 20 mg·d−1 days 1–5, 10 mg·d−1 days 6–10 Typical COVID-19, segmental lung atelectasis A. fumigatus NR (-) (-) BAL PCR A. fumigatus, serum PCR (-), BDG (-) NR No host factor Putative but note BAL culture (+) but BAL GM (-) None Alive
T44 5585-5814 Sentence denotes Paris, France [9] 77 M Asthma, dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 “Typical COVID-19”, emphysema A. fumigatus NR (+) 3.9 (-) BAL PCR A. fumigatus, serum PCR (-), BDG (+) 135 NR No host factor Putative V Died
T45 5815-6070 Sentence denotes Paris, France [9] 75 F Diabetes, dexamethasone 20 mg·day−1 days 1–5, 10 mg·day−1 days 6–10 Typical COVID-19 A. fumigatus NR (-) (-) BAL PCR, A. fumigatus, serum PCR (-), BDG (+) 450 NR No host factor Putative but note BAL culture (+) but BAL GM (-) C Died
T46 6071-6296 Sentence denotes Paris, France [9] 47 M Myeloma, corticosteroids Typical COVID-19, one peripheral nodule ND A. fumigatus ND (-) TA PCR A. fumigatus, serum PCR (-), BDG (-) NR Probable Putative only if TA considered equivalent to BAL None Died
T47 6297-6629 Sentence denotes Graz, Austria [20] 70 M Moderate COPD, steroid inhaler, obstructive sleep apnoea, diabetes Ground-glass opacities, crazy paving, reversed halo sign, progression of the bilateral infiltrates on day 2 chest radiography ND A. fumigatus ND (-) TA LFD (+), BDG (-) 3 No host factor Putative only if TA considered equivalent to BAL V Died
T48 6630-6759 Sentence denotes Antwerp, Belgium [8] 86 M None ND ND A. flavus ND (-) 9 No host factor Putative only if TA considered equivalent to BAL None Died
T49 6760-6882 Sentence denotes Antwerp, Belgium [8] 38 M None (+) A. fumigatus NR (+) >2.8 (-) Histology from bronchoscopy (+) 6 Proven Proven V, I Alive
T50 6883-7005 Sentence denotes Antwerp, Belgium [8] 62 M Diabetes ND A. fumigatus NR (+) >2.0 (-) Histology from bronchoscopy (+) 16 Proven Proven V Died
T51 7006-7128 Sentence denotes Antwerp, Belgium [8] 73 M Diabetes ND A. fumigatus NR (+) >2.8 (-) Histology from bronchoscopy (+) 5 Proven Proven V Alive
T52 7129-7301 Sentence denotes Antwerp, Belgium [8] 77 M Diabetes, chronic corticosteroids for pemphigus foliaceous ND A. fumigatus NR (+) 2.79 (-) Histology from bronchoscopy (+) 2 Proven Proven V Alive
T53 7302-7498 Sentence denotes Antwerp, Belgium [8] 55 M HIV (CD4 count >250, viral load <20) copies) ND (-) NR (-) (+) 0.8 Histology from bronchoscopy (-) 13 No host factor Putative but relies on serum GM of only 0.8 V, I Died
T54 7499-7606 Sentence denotes Antwerp, Belgium [8] 75 M AML with IPA 2012 ND A. fumigatus NR (+) 2.63 ND 8 No host factor Putative V Died
T55 7607-7856 Sentence denotes Breda, The Netherlands [10] 83 M Prednisolone 0.13 mg·kg−1·day−1×28 days for cardiomyopathy NR ND A. fumigatus ND (-) 3 Probable if steroid requirement reduced to <0.3 mg·kg−1·day−1 Putative only if TA considered equivalent to BAL V+A, or L-AmB Died
T56 7857-8075 Sentence denotes Breda, The Netherlands [10] 67 M Severe COPD, Post RT for NSCLC 2014, prednisolone 0.37 mg·kg−1·day−1×2 days NR ND A. fumigatus ND ND 3 No host factor Putative only if TA considered equivalent to BAL V+A, or L-AmB Died
T57 8076-8247 Sentence denotes Breda, The Netherlands [10] 75 M Moderate COPD NR A. fumigatus NR (+) 4.0 ND Mucoid white sputum left bronchus at bronchoscopy 5 No host factor Putative V+A, or L-AmB Died
T58 8248-8354 Sentence denotes Breda, The Netherlands [10] 43 M None NR (-) NR (+) 3.8 (-) 14 No host factor Putative V+A, or L-AmB Alive
T59 8355-8488 Sentence denotes Breda, The Netherlands [10] 57 M Asthma, inhaled steroids NR A. fumigatus NR (+) 1.6 (-) 5 No host factor Putative V+A, or L-AmB Died
T60 8489-8638 Sentence denotes Breda, The Netherlands [10] 58 M None NR ND A. fumigatus ND ND 28 No host factor Putative only if TA considered equivalent to BAL V+A, or L-AmB Alive
T61 8639-8845 Sentence denotes Paris, France [21] 80 M None Pleural effusions, alveolar condensation, ground-glass opacities, pulmonary cysts ND A. flavus ND ND NR No host factor Putative only if TA considered equivalent to BAL V, I Died
T62 8846-9057 Sentence denotes Milan, Italy [22] 73 M Diabetes Interstitial opacities with right upper lobe focal consolidation which progressively worsened A. fumigatus NR ND (+) 8.6 Lung histology from PM (+), PM tissue PCR Aspergillus spp.
T63 9058-9084 Sentence denotes 9 Proven Proven L-AmB Died
T64 9085-9118 Sentence denotes Summary Median (IQR)70 (57–75) M:
T65 9119-9581 Sentence denotes 26 (79%) out of 33 EORTC host factor: n=2 (6%); inhaled/systemic steroid exposure: n=16 (48%); diabetes: n=10 (30%); chronic lung disease: n=9 (27%) Nodules: n=6 (31.6%), cavity/halo-sign: n=2 (10.5%) 16 (72.7%) out of 22 with BAL 14 (66.7%) out of 21 with BAL GM 6 (21.4%) out of 28 with serum GM Median (IQR)5.5 (4.3–9) Proven: n=5; probable: n=1; no host factor: n=27 Proven: n=5; putative: n=11; putative with caveats: n=17 24 (72.7%) treated 21 (63.6%) died
T66 9582-9698 Sentence denotes IPA: invasive pulmonary aspergillosis; BAL: bronchoalveolar lavage; TA: tracheal aspirate; GM: galactomannan; EORTC:
T67 9699-9849 Sentence denotes European Organization for Research and Treatment of Cancer; AspICU: clinical criteria to diagnose IPA; M: male; F: female; BDG: (1–3)-β-D-glucan; LFD:
T68 9850-10723 Sentence denotes Aspergillus lateral-flow device; PM: post mortem; AML: acute myeloid leukaemia; RT: radiotherapy; NSCLC: nonsmall-cell lung cancer; NR: not recorded; V: voriconazole; I: isavuconazole; L-AmB: liposomal amphotericin B; C: caspofungin; A: anidulafungin; ND: no data; (+): positive result; (-): negative result. #: without histological evidence of “proven” IPA a patient host factor (e.g. recent neutropenia, haematological malignancy) is required to meet the probable/possible definition, corticosteroids must be given at ≥0.3 mg·kg−1 for ≥3 weeks to classify as a host factor result.Invasive aspergillosis is difficult to diagnose in critically unwell patients without traditional host factors because radiological changes are usually nonspecific (e.g. infiltrates, consolidation or nodules), with features such as halo sign, air-crescent sign or cavitation being rare [24].
T69 10724-11035 Sentence denotes For these reasons Schauwvlieghe et al. [13] developed the modified AspICU criteria to help diagnose IAPA which (in the absence of histology) essentially relies on mycological evidence of Aspergillus spp. in the form of a positive bronchoalveolar lavage (BAL) culture or positive galactomannan (GM) in serum/BAL.
T70 11036-11228 Sentence denotes Applying these modified AspICU criteria, five cases of CAPA in table 1 were “proven”, 11 “putative” and 17 might be considered putative but with caveats which have been described in the table.
T71 11229-11408 Sentence denotes For example, in many cases a tracheal aspirate, rather than BAL, provided the only mycological evidence of invasive aspergillosis (in the absence of tracheobronchitis/cavitation).
T72 11409-11594 Sentence denotes There should therefore be caution about over-estimating the incidence of CAPA from such case series, which may include some patients with aspergillus colonisation or contamination only.
T73 11595-12037 Sentence denotes In the study by Alanio et al. [9] which reported evidence of CAPA in nine (33%) out of 27 ventilated patients who underwent BAL/tracheal aspirate, one case was defined based on a BAL GM of 0.89 (below the usual cut-off of 1.0), two based on tracheal aspirate rather than BAL culture, one based on a serum GM of 0.51 (cut-off being 0.50) and in four cases BAL culture was positive but BAL GM negative, which suggests a lack of tissue invasion.
T74 12038-12119 Sentence denotes Indeed, out of seven cases that were not treated with antifungals, five survived.
T75 12120-12319 Sentence denotes Accordingly, larger, prospective, multi-site studies are needed to refine the AspICU criteria for patients with COVID-19, as well as to estimate incidence and the impact of CAPA on survival [25, 26].

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 257-268 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T6 280-301 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T7 352-358 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T8 1486-1492 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T9 1637-1657 Phenotype denotes chronic lung disease http://purl.obolibrary.org/obo/HP_0006528
T10 1659-1663 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T11 1671-1677 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T12 1693-1702 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T13 1710-1728 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T14 1775-1786 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T15 2595-2599 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T16 3079-3096 Phenotype denotes air crescent sign http://purl.obolibrary.org/obo/HP_0032172
T17 3229-3238 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T18 3247-3251 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T19 3328-3337 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T20 3689-3707 Phenotype denotes Pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T21 3735-3744 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T22 3901-3910 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T23 4029-4053 Phenotype denotes Myelodysplastic syndrome http://purl.obolibrary.org/obo/HP_0002863
T24 5127-5133 Phenotype denotes Asthma http://purl.obolibrary.org/obo/HP_0002099
T25 5426-5437 Phenotype denotes atelectasis http://purl.obolibrary.org/obo/HP_0100750
T26 5608-5614 Phenotype denotes Asthma http://purl.obolibrary.org/obo/HP_0002099
T27 5694-5703 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T28 6330-6334 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T29 6353-6377 Phenotype denotes obstructive sleep apnoea http://purl.obolibrary.org/obo/HP_0002870
T30 6426-6444 Phenotype denotes reversed halo sign http://purl.obolibrary.org/obo/HP_0032983
T31 7525-7528 Phenotype denotes AML http://purl.obolibrary.org/obo/HP_0004808
T32 7684-7698 Phenotype denotes cardiomyopathy http://purl.obolibrary.org/obo/HP_0001638
T33 7897-7901 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T34 7915-7920 Phenotype denotes NSCLC http://purl.obolibrary.org/obo/HP_0030358
T35 8118-8122 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T36 8388-8394 Phenotype denotes Asthma http://purl.obolibrary.org/obo/HP_0002099
T37 8668-8685 Phenotype denotes Pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T38 8734-8749 Phenotype denotes pulmonary cysts http://purl.obolibrary.org/obo/HP_0032445
T39 9236-9256 Phenotype denotes chronic lung disease http://purl.obolibrary.org/obo/HP_0006528
T40 9587-9619 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T41 9751-9757 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T42 9900-9903 Phenotype denotes AML http://purl.obolibrary.org/obo/HP_0004808
T43 9905-9928 Phenotype denotes acute myeloid leukaemia http://purl.obolibrary.org/obo/HP_0004808
T44 9948-9953 Phenotype denotes NSCLC http://purl.obolibrary.org/obo/HP_0030358
T45 9969-9980 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526
T46 10243-10254 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T47 10675-10692 Phenotype denotes air-crescent sign http://purl.obolibrary.org/obo/HP_0032172

2_test

Id Subject Object Predicate Lexical cue
32703771-22895826-29390903 125-127 22895826 denotes 12
32703771-30076119-29390903 125-127 30076119 denotes 12
32703771-28387526-29390903 125-127 28387526 denotes 12
32703771-28387526-29390904 394-396 28387526 denotes 14
32703771-27704024-29390905 398-400 27704024 denotes 15
32703771-12890854-29390906 768-769 12890854 denotes 5
32703771-32171076-29390907 849-850 32171076 denotes 1
32703771-22517788-29390908 10719-10721 22517788 denotes 24
32703771-30076119-29390909 10764-10766 30076119 denotes 13
32703771-32445626-29390910 11626-11627 32445626 denotes 9