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PMC:7376974 / 50518-51914 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T208 479-491 Body_part denotes cell surface http://purl.org/sig/ont/fma/fma67653
T209 479-483 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T210 780-782 Body_part denotes HS http://purl.org/sig/ont/fma/fma63023
T211 968-970 Body_part denotes HS http://purl.org/sig/ont/fma/fma63023
T212 1088-1096 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
878 159-172 Species denotes duck reovirus Tax:1171667
879 265-270 Species denotes HSV-1 Tax:10298
880 504-509 Species denotes HSV-1 Tax:10298
881 861-881 Species denotes human papillomavirus Tax:10566
882 883-895 Species denotes Dengue virus Tax:12637
883 1332-1350 Species denotes pseudorabies virus Tax:10345
884 1356-1381 Species denotes African swine fever virus Tax:10497
885 100-102 Chemical denotes GO MESH:C000628730
886 108-117 Chemical denotes hypericin MESH:C004965
887 351-358 Chemical denotes sulfate MESH:D013431
888 370-380 Chemical denotes iron oxide MESH:C000499
889 445-452 Chemical denotes sulfate MESH:D013431
890 919-926 Chemical denotes sulfate MESH:D013431
891 942-950 Chemical denotes graphene MESH:D006108
892 1198-1205 Chemical denotes sulfate MESH:D013431
893 1244-1264 Chemical denotes polyglycerol sulfate

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T135 883-889 Disease denotes Dengue http://purl.obolibrary.org/obo/MONDO_0005502
T136 1332-1344 Disease denotes pseudorabies http://purl.obolibrary.org/obo/MONDO_0005932
T137 1356-1375 Disease denotes African swine fever http://purl.obolibrary.org/obo/MONDO_0025377
T138 1364-1375 Disease denotes swine fever http://purl.obolibrary.org/obo/MONDO_0025087

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T444 23-24 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T445 139-140 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T446 159-163 http://purl.obolibrary.org/obo/NCBITaxon_8839 denotes duck
T447 343-350 http://purl.obolibrary.org/obo/OBI_0100026 denotes organic
T448 343-350 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organic
T449 479-483 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T450 786-787 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T451 830-837 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T452 852-859 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T453 861-866 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T454 890-895 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T455 911-918 http://purl.obolibrary.org/obo/OBI_0100026 denotes organic
T456 911-918 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organic
T457 989-992 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T458 1285-1288 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T459 1345-1350 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T460 1376-1381 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T63052 42-58 Chemical denotes antiviral agents http://purl.obolibrary.org/obo/CHEBI_22587
T67337 108-117 Chemical denotes hypericin http://purl.obolibrary.org/obo/CHEBI_5835
T4602 343-358 Chemical denotes organic sulfate http://purl.obolibrary.org/obo/CHEBI_25704
T5438 351-358 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T18551 370-380 Chemical denotes iron oxide http://purl.obolibrary.org/obo/CHEBI_50816|http://purl.obolibrary.org/obo/CHEBI_50820
T31325 370-374 Chemical denotes iron http://purl.obolibrary.org/obo/CHEBI_18248
T74333 375-380 Chemical denotes oxide http://purl.obolibrary.org/obo/CHEBI_25741|http://purl.obolibrary.org/obo/CHEBI_29356
T19090 381-403 Chemical denotes magnetic nanoparticles http://purl.obolibrary.org/obo/CHEBI_139554
T55225 390-403 Chemical denotes nanoparticles http://purl.obolibrary.org/obo/CHEBI_50803
T72128 445-452 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T2686 780-782 Chemical denotes HS http://purl.obolibrary.org/obo/CHEBI_74056
T24919 911-926 Chemical denotes organic sulfate http://purl.obolibrary.org/obo/CHEBI_25704
T98688 919-926 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T21772 942-950 Chemical denotes graphene http://purl.obolibrary.org/obo/CHEBI_36973
T72651 968-970 Chemical denotes HS http://purl.obolibrary.org/obo/CHEBI_74056
T68973 1088-1096 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T57851 1159-1168 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T15203 1198-1205 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189
T84481 1257-1264 Chemical denotes sulfate http://purl.obolibrary.org/obo/CHEBI_16189

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T5 780-782 GlycoEpitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T6 968-970 GlycoEpitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T322 0-59 Sentence denotes GO can be also used as a platform to link antiviral agents.
T323 60-412 Sentence denotes Encouraging results were reported using GO with hypericin for the treatment of a recently appeared duck reovirus.81 More recently, Deokar et al. reported an original rGO-based multifunctional platform for HSV-1 treatment.82 In this work, the authors functionalized the material with organic sulfate groups and iron oxide magnetic nanoparticles (FeNPs).
T324 413-510 Sentence denotes The rGO functionalized with the sulfate is able to mimic the host cell surface and to bind HSV-1.
T325 511-666 Sentence denotes Subsequently, the viral particles captured onto the rGO-FeNP surface can be concentrated via magnetic precipitation and destroyed via photothermal therapy.
T326 667-779 Sentence denotes This approach is highly efficient for disinfection with low energy (1.6 W/cm2 for 7 min) and cost effectiveness.
T327 780-1015 Sentence denotes HS is a common entry receptor in various types of viruses (e.g., herpes viruses, human papillomavirus, Dengue virus).83 The use of organic sulfate-functionalized graphene sheets mimicking HS, like GO and rGO, has been already explored.
T328 1016-1396 Sentence denotes However, it is worth noting that these NMs are prone to strongly adsorb proteins in culture environments (coronation), likely inhibiting their antiviral efficacy.84 High loadings of sulfate groups were introduced onto rGO using polyglycerol sulfate.85,86 This approach has been used for inhibition of orthopoxvirus, pseudorabies virus, and African swine fever virus in vitro.85,86

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T11 1370-1375 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32667191-24364493-153342 1178-1180 24364493 denotes 84