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PMC:7376974 / 13930-15262 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T56 72-75 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T57 135-138 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T58 309-316 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T59 411-414 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T60 574-577 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T61 655-658 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T62 861-866 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T63 939-943 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T64 1167-1172 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T65 1250-1257 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T66 1274-1286 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
141 123-128 Gene denotes gp120 Gene:3700
142 185-190 Gene denotes gp120 Gene:3700
143 72-77 Species denotes HIV-1 Tax:11676
144 135-140 Species denotes HIV-1 Tax:11676
145 197-202 Species denotes HSV-1 Tax:10298
146 204-209 Species denotes HSV-2 Tax:10310
147 215-221 Species denotes HPIV-3 Tax:11216
148 323-340 Species denotes Adenovirus type 3 Tax:45659
149 431-435 Species denotes H1N1 Tax:114727
150 436-453 Species denotes influenza A virus Tax:11320
151 782-796 Species denotes Vaccinia virus Tax:10245
152 873-889 Species denotes Monkey pox virus Tax:10244
153 974-988 Species denotes Tacaribe virus Tax:11631
154 1067-1077 Species denotes Poliovirus Tax:138950
155 1179-1183 Species denotes TGEV Tax:11149
156 1237-1241 Species denotes TGEV Tax:11149
157 1267-1271 Species denotes TGEV Tax:11149
158 498-509 Species denotes respiratory Tax:12814
159 701-705 Species denotes PPRV Tax:31604
160 891-894 Species denotes MPV Tax:10244
161 990-994 Species denotes TCRV Tax:11631

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 431-445 Disease denotes H1N1 influenza http://purl.obolibrary.org/obo/MONDO_0005460
T32 436-445 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T33 782-790 Disease denotes Vaccinia http://purl.obolibrary.org/obo/MONDO_0002595
T34 873-883 Disease denotes Monkey pox http://purl.obolibrary.org/obo/MONDO_0002594
T35 1164-1166 Disease denotes RD http://purl.obolibrary.org/obo/MONDO_0009973

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T123 0-5 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T124 25-31 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T125 131-133 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T126 355-357 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T127 391-396 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T128 446-447 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T129 448-453 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T130 753-758 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T131 791-796 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T132 861-866 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T133 873-879 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes Monkey
T134 884-889 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T135 928-933 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T136 939-943 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T137 970-972 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T138 983-988 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T139 1032-1037 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T140 1164-1172 http://purl.obolibrary.org/obo/CLO_0051806 denotes RD cells
T141 1164-1172 http://purl.obolibrary.org/obo/CLO_0051808 denotes RD cells
T142 1164-1172 http://purl.obolibrary.org/obo/CLO_0051894 denotes RD cells
T143 1164-1166 http://purl.obolibrary.org/obo/CLO_0008770 denotes RD
T144 1289-1291 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T113 309-316 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T114 411-414 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T115 522-530 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T116 574-577 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T117 639-658 Chemical denotes double-stranded DNA http://purl.obolibrary.org/obo/CHEBI_4705
T118 655-658 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T119 1164-1166 Chemical denotes RD http://purl.obolibrary.org/obo/CHEBI_73812
T120 1250-1257 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T121 1274-1286 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T29 531-540 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T30 839-866 http://purl.obolibrary.org/obo/GO_0046718 denotes viral entry into host cells
T31 845-860 http://purl.obolibrary.org/obo/GO_0044409 denotes entry into host

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T89 0-71 Sentence denotes virus shape size (nm) active concentration mechanism of action ref
T90 72-134 Sentence denotes HIV-1 spherical 1–10 25 μg/mL interaction with gp120 (11)
T91 135-196 Sentence denotes HIV-1 IIIB – 30–50 440 μg/mL interaction with gp120 (19)
T92 197-322 Sentence denotes HSV-1, HSV-2, and HPIV-3 – 20–50 not available possible interaction directly with the viral envelope or its protein (20)
T93 323-430 Sentence denotes Adenovirus type 3 spherical 5–18 25 μg/mL direct destruction of virus particles and DNA structure (15)
T94 431-592 Sentence denotes H1N1 influenza A virus spherical 5–20 12.5 μg/mL inhibition of respiratory enzymes and electron transport components and interference with DNA function (21)
T95 593-700 Sentence denotes HBV spherical 10–50 5 μM interaction with double-stranded DNA and/or binding with viral particles (16)
T96 701-781 Sentence denotes PPRV spherical 5–30 11.1 μg/mL interaction with virus surface and core (12)
T97 782-872 Sentence denotes Vaccinia virus spherical 25 not available preventing viral entry into host cells (13)
T98 873-973 Sentence denotes Monkey pox virus (MPV) – 10–80 12.5 μg/mL blocking virus-host cell binding and penetration (22)
T99 974-1066 Sentence denotes Tacaribe virus (TCRV) – 5–10 25 μg/mL inactivation of virus particles before entry (23)
T100 1067-1178 Sentence denotes Poliovirus spherical 4–9 3.1 ppm preventing viral particles from binding to the receptors of RD cells (24)
T101 1179-1292 Sentence denotes TGEV spherical <20 12.5 μg/mL direct interaction with TGEV surface protein, such as TGEV S glycoprotein (18)
T102 1293-1312 Sentence denotes linear 60000–80000

2_test

Id Subject Object Predicate Lexical cue
32667191-23886562-153271 427-429 23886562 denotes 15
32667191-21945220-153272 589-591 21945220 denotes 21
32667191-18505176-153273 697-699 18505176 denotes 16
32667191-24979044-153274 778-780 24979044 denotes 12
32667191-23980510-153275 869-871 23980510 denotes 13
32667191-28040515-153276 1175-1177 28040515 denotes 24
32667191-24524838-153277 1289-1291 24524838 denotes 18