PMC:7376845 / 19390-20321 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7376845","sourcedb":"PMC","sourceid":"7376845","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7376845","text":"Four mAbs with distinct binding profiles to SARS-CoV-1, as previously mapped by internal deletion mutagenesis study, were selected for testing to determine if they cross-react with SARS-CoV-2. A fragment containing residues 1048 to 1206 of SARS-CoV-2 S protein was expressed in 293FT cells via transient transfection and WB analysis was performed using the four mAbs, namely 2B2, 1A9, 4B12 and 1G10. As shown in Figure 2A, all four mAbs detected this fragment of SARS-CoV-2, which is consistent with the sequence alignment shown in Figure 1. Due to the easy detachment of 293FT cells, COS-7 cells were used for IF assay instead. IF analysis performed on transiently transfected COS-7 cells showed binding of the four mAbs to this S protein fragment of SARS-CoV-2 (Figure 2B). These interactions are also specific for the SARS-COV-2 S protein (1048–1206) fragment as all four mAbs did not show binding to the negative control HBcAg.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T120","span":{"begin":253,"end":260},"obj":"Body_part"},{"id":"T121","span":{"begin":284,"end":289},"obj":"Body_part"},{"id":"T122","span":{"begin":578,"end":583},"obj":"Body_part"},{"id":"T123","span":{"begin":591,"end":596},"obj":"Body_part"},{"id":"T124","span":{"begin":684,"end":689},"obj":"Body_part"},{"id":"T125","span":{"begin":732,"end":739},"obj":"Body_part"},{"id":"T126","span":{"begin":834,"end":841},"obj":"Body_part"}],"attributes":[{"id":"A120","pred":"fma_id","subj":"T120","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A121","pred":"fma_id","subj":"T121","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A122","pred":"fma_id","subj":"T122","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A123","pred":"fma_id","subj":"T123","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A124","pred":"fma_id","subj":"T124","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A125","pred":"fma_id","subj":"T125","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A126","pred":"fma_id","subj":"T126","obj":"http://purl.org/sig/ont/fma/fma67257"},{"subj":"T120","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T121","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T122","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T123","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T124","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T125","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T126","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"486","span":{"begin":44,"end":52},"obj":"Species"},{"id":"487","span":{"begin":181,"end":191},"obj":"Species"},{"id":"488","span":{"begin":240,"end":250},"obj":"Species"},{"id":"489","span":{"begin":463,"end":473},"obj":"Species"},{"id":"490","span":{"begin":752,"end":762},"obj":"Species"},{"id":"491","span":{"begin":821,"end":831},"obj":"Species"},{"id":"492","span":{"begin":278,"end":283},"obj":"CellLine"},{"id":"493","span":{"begin":572,"end":577},"obj":"CellLine"},{"id":"494","span":{"begin":585,"end":590},"obj":"CellLine"},{"id":"495","span":{"begin":678,"end":683},"obj":"CellLine"}],"attributes":[{"id":"A486","pred":"tao:has_database_id","subj":"486","obj":"Tax:694009"},{"id":"A487","pred":"tao:has_database_id","subj":"487","obj":"Tax:2697049"},{"id":"A488","pred":"tao:has_database_id","subj":"488","obj":"Tax:2697049"},{"id":"A489","pred":"tao:has_database_id","subj":"489","obj":"Tax:2697049"},{"id":"A490","pred":"tao:has_database_id","subj":"490","obj":"Tax:2697049"},{"id":"A491","pred":"tao:has_database_id","subj":"491","obj":"Tax:2697049"},{"id":"A492","pred":"tao:has_database_id","subj":"492","obj":"CVCL:6911"},{"id":"A493","pred":"tao:has_database_id","subj":"493","obj":"CVCL:6911"},{"id":"A494","pred":"tao:has_database_id","subj":"494","obj":"CVCL:0224"},{"id":"A495","pred":"tao:has_database_id","subj":"495","obj":"CVCL:0224"},{"subj":"486","pred":"source","obj":"LitCovid-PubTator"},{"subj":"487","pred":"source","obj":"LitCovid-PubTator"},{"subj":"488","pred":"source","obj":"LitCovid-PubTator"},{"subj":"489","pred":"source","obj":"LitCovid-PubTator"},{"subj":"490","pred":"source","obj":"LitCovid-PubTator"},{"subj":"491","pred":"source","obj":"LitCovid-PubTator"},{"subj":"492","pred":"source","obj":"LitCovid-PubTator"},{"subj":"493","pred":"source","obj":"LitCovid-PubTator"},{"subj":"494","pred":"source","obj":"LitCovid-PubTator"},{"subj":"495","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T169","span":{"begin":44,"end":52},"obj":"Disease"},{"id":"T170","span":{"begin":44,"end":48},"obj":"Disease"},{"id":"T171","span":{"begin":181,"end":189},"obj":"Disease"},{"id":"T172","span":{"begin":181,"end":185},"obj":"Disease"},{"id":"T173","span":{"begin":240,"end":248},"obj":"Disease"},{"id":"T174","span":{"begin":240,"end":244},"obj":"Disease"},{"id":"T175","span":{"begin":463,"end":471},"obj":"Disease"},{"id":"T176","span":{"begin":463,"end":467},"obj":"Disease"},{"id":"T177","span":{"begin":752,"end":760},"obj":"Disease"},{"id":"T178","span":{"begin":752,"end":756},"obj":"Disease"},{"id":"T179","span":{"begin":821,"end":825},"obj":"Disease"}],"attributes":[{"id":"A169","pred":"mondo_id","subj":"T169","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A170","pred":"mondo_id","subj":"T170","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A171","pred":"mondo_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A172","pred":"mondo_id","subj":"T172","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A173","pred":"mondo_id","subj":"T173","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A174","pred":"mondo_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A175","pred":"mondo_id","subj":"T175","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A176","pred":"mondo_id","subj":"T176","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A177","pred":"mondo_id","subj":"T177","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A178","pred":"mondo_id","subj":"T178","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A179","pred":"mondo_id","subj":"T179","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"subj":"T169","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T170","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T171","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T172","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T173","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T174","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T175","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T176","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T177","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T178","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T179","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T189","span":{"begin":135,"end":142},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T190","span":{"begin":193,"end":194},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T191","span":{"begin":284,"end":289},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T192","span":{"begin":394,"end":398},"obj":"http://purl.obolibrary.org/obo/CLO_0001165"},{"id":"T193","span":{"begin":419,"end":421},"obj":"http://purl.obolibrary.org/obo/CLO_0001236"},{"id":"T194","span":{"begin":578,"end":583},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T195","span":{"begin":585,"end":596},"obj":"http://purl.obolibrary.org/obo/CLO_0051656"},{"id":"T196","span":{"begin":585,"end":596},"obj":"http://purl.obolibrary.org/obo/CLO_0051657"},{"id":"T197","span":{"begin":585,"end":596},"obj":"http://purl.obolibrary.org/obo/CLO_0051658"},{"id":"T198","span":{"begin":585,"end":590},"obj":"http://purl.obolibrary.org/obo/CLO_0002597"},{"id":"T199","span":{"begin":585,"end":590},"obj":"http://purl.obolibrary.org/obo/CLO_0050508"},{"id":"T200","span":{"begin":678,"end":689},"obj":"http://purl.obolibrary.org/obo/CLO_0051656"},{"id":"T201","span":{"begin":678,"end":689},"obj":"http://purl.obolibrary.org/obo/CLO_0051657"},{"id":"T202","span":{"begin":678,"end":689},"obj":"http://purl.obolibrary.org/obo/CLO_0051658"},{"id":"T203","span":{"begin":678,"end":683},"obj":"http://purl.obolibrary.org/obo/CLO_0002597"},{"id":"T204","span":{"begin":678,"end":683},"obj":"http://purl.obolibrary.org/obo/CLO_0050508"}],"attributes":[{"subj":"T189","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T190","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T191","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T192","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T193","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T194","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T195","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T196","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T197","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T198","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T199","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T200","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T201","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T202","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T203","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T204","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T172","span":{"begin":253,"end":260},"obj":"Chemical"},{"id":"T173","span":{"begin":732,"end":739},"obj":"Chemical"},{"id":"T174","span":{"begin":834,"end":841},"obj":"Chemical"}],"attributes":[{"id":"A172","pred":"chebi_id","subj":"T172","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A173","pred":"chebi_id","subj":"T173","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A174","pred":"chebi_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T172","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T173","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T174","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":394,"end":398},"obj":"GlycoEpitope"}],"attributes":[{"id":"A1","pred":"glyco_epitope_db_id","subj":"T1","obj":"http://www.glycoepitope.jp/epitopes/AN0438"},{"subj":"T1","pred":"source","obj":"LitCovid-PD-GlycoEpitope"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T148","span":{"begin":0,"end":192},"obj":"Sentence"},{"id":"T149","span":{"begin":193,"end":399},"obj":"Sentence"},{"id":"T150","span":{"begin":400,"end":541},"obj":"Sentence"},{"id":"T151","span":{"begin":542,"end":628},"obj":"Sentence"},{"id":"T152","span":{"begin":629,"end":775},"obj":"Sentence"},{"id":"T153","span":{"begin":776,"end":931},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T148","pred":"source","obj":"LitCovid-sentences"},{"subj":"T149","pred":"source","obj":"LitCovid-sentences"},{"subj":"T150","pred":"source","obj":"LitCovid-sentences"},{"subj":"T151","pred":"source","obj":"LitCovid-sentences"},{"subj":"T152","pred":"source","obj":"LitCovid-sentences"},{"subj":"T153","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ecb193","default":true},{"id":"LitCovid-PubTator","color":"#9793ec"},{"id":"LitCovid-PD-MONDO","color":"#a8ec93"},{"id":"LitCovid-PD-CLO","color":"#ec93c2"},{"id":"LitCovid-PD-CHEBI","color":"#93dcec"},{"id":"LitCovid-PD-GlycoEpitope","color":"#ece293"},{"id":"LitCovid-sentences","color":"#c793ec"}]}]}}